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Migrated merqury to nf-test and moved to merqury/merqury to make room for merqury/hapmers #10606

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Migrated merqury to nf-test and moved to merqury/merqury to make room for merqury/hapmers

Migrated merqury to nf-test and moved to merqury/merqury to make room for merqury/hapmers #10606

Triggered via pull request May 22, 2024 22:53
@GallVpGallVp
synchronize #5657
GallVp:merqury
Status Cancelled
Total duration 6m 14s
Artifacts –

test.yml

on: pull_request
nf-test-changes
1m 17s
nf-test-changes
pytest-changes
8s
pytest-changes
prettier
52s
prettier
editorconfig
9s
editorconfig
pre-commit
15s
pre-commit
Matrix: nf-test
Matrix: nf-core-lint-modules
Matrix: nf-core-lint-modules
Matrix: pytest
confirm-pass
0s
confirm-pass
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61 errors and 2 warnings
nf-test (modules/nf-core/bclconvert, singularity)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/bclconvert, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/biscuit/align, singularity)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/biscuit/align, conda)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/checkm/lineagewf, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/checkm/lineagewf, singularity)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/chromap/index, conda)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/checkm/lineagewf, conda)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/chromap/index, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/csvtk/join, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/csvtk/join, singularity)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/chromap/index, singularity)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/csvtk/join, conda)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/csvtk/split, singularity)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/csvtk/split, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/csvtk/split, conda)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/salsa2, conda)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/salsa2, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (subworkflows/nf-core/bcl_demultiplex, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/salsa2, singularity)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (subworkflows/nf-core/bcl_demultiplex, singularity)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/gatk4/indexfeaturefile, singularity)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/gatk4/intervallisttools, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/gatk4/indexfeaturefile, conda)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/gatk4/indexfeaturefile, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/gatk4/variantfiltration, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/gatk4/variantfiltration, singularity)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/gatk4/intervallisttools, conda)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/merqury/merqury, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/gatk4/variantfiltration, conda)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/viennarna/rnafold, singularity)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/merqury/merqury, conda)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/merqury/merqury, singularity)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/viennarna/rnacofold, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/viennarna/rnafold, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/viennarna/rnacofold, conda)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/viennarna/rnacofold, singularity)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/viennarna/rnalfold, singularity)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/viennarna/rnalfold, conda)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/viennarna/rnafold, conda)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/viennarna/rnalfold, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/gatk4/intervallisttools, singularity)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/biscuit/align, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/biscuit/align, docker_self_hosted)
A task was canceled.
nf-test (modules/nf-core/bamtofastq10x, singularity)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/bamtofastq10x, singularity)
A task was canceled.
nf-core-lint-modules (salsa2)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/bamtofastq10x, conda)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/bamtofastq10x, conda)
A task was canceled.
nf-core-lint-modules (viennarna/rnalfold)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-core-lint-modules (viennarna/rnalfold)
The operation was canceled.
nf-test (modules/nf-core/bamtofastq10x, docker_self_hosted)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-test (modules/nf-core/bamtofastq10x, docker_self_hosted)
A task was canceled.
nf-core-lint-modules (viennarna/rnacofold)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-core-lint-modules (viennarna/rnacofold)
The operation was canceled.
nf-core-lint-modules (viennarna/rnafold)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-core-lint-modules (viennarna/rnafold)
The operation was canceled.
nf-core-lint-modules (gatk4/variantfiltration)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-core-lint-modules (gatk4/variantfiltration)
The operation was canceled.
nf-core-lint-modules (merqury/merqury)
Canceling since a higher priority waiting request for 'Run tests-5657' exists
nf-core-lint-modules (merqury/merqury)
The operation was canceled.
pytest-changes
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: mirpedrol/paths-filter@main. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
pre-commit
The `python-version` input is not set. The version of Python currently in `PATH` will be used.