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Add nf-test to chromap/chromap #5678

Merged
merged 10 commits into from
May 22, 2024
Merged

Add nf-test to chromap/chromap #5678

merged 10 commits into from
May 22, 2024

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bnovotny
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PR checklist

Closes #XXX

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Emit the versions.yml file.
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker
      • nf-core modules test <MODULE> --profile singularity
      • nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • nf-core subworkflows test <SUBWORKFLOW> --profile conda

@maxulysse
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Can you delete the old pytest tests?

@bnovotny
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Can you delete the old pytest tests?

They should be deleted in my first commit!

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@JoseEspinosa JoseEspinosa left a comment

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I think you forgot to remove the module from tests/config/pytest_modules.yml here. Please do it before merging, I won't request changes not to block the merge as I am clocking off now.

@maxulysse maxulysse requested a review from a team as a code owner May 22, 2024 21:40
@maxulysse maxulysse requested review from LeuThrAsp and removed request for a team May 22, 2024 21:40
@maxulysse maxulysse enabled auto-merge May 22, 2024 22:34
@maxulysse
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@bnovotny hope you don't mind, I committed to your branch to finish this PR

@bnovotny
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@bnovotny hope you don't mind, I committed to your branch to finish this PR

Don't mind at all, thank you for finishing it!!

@maxulysse maxulysse disabled auto-merge May 22, 2024 23:06
@maxulysse maxulysse enabled auto-merge May 22, 2024 23:11
@maxulysse maxulysse added this pull request to the merge queue May 22, 2024
Merged via the queue into nf-core:master with commit e37348c May 22, 2024
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tstoeriko pushed a commit to tstoeriko/nf-core-modules that referenced this pull request May 23, 2024
* Add nf-test to chromap/chromap

* Add nf-test to chromap/chromap (tags added)

* Update modules/nf-core/chromap/chromap/tests/main.nf.test

* Update modules/nf-core/chromap/chromap/tests/tags.yml

* Update pytest_modules.yml

* Update main.nf.test

* Update main.nf.test.snap

* Update main.nf.test

* Update main.nf.test.snap

---------

Co-authored-by: Maxime U Garcia <maxime.garcia@seqera.io>
Co-authored-by: Maxime U Garcia <max.u.garcia@gmail.com>
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4 participants