Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

fastq concatenation expects barcode01 directory exists #11

Closed
FranBonath opened this issue Oct 10, 2019 · 1 comment
Closed

fastq concatenation expects barcode01 directory exists #11

FranBonath opened this issue Oct 10, 2019 · 1 comment

Comments

@FranBonath
Copy link
Member

FranBonath commented Oct 10, 2019 •
edited
Loading

line 239: if [ -d "barcode01" ]

get Error when running samples that don't contain barcode01 (e.g. my pool contains barcode 16-18)

solved it by replacing line 239 with
if ls -d "barcode"*

but there might be a more beautiful bash solution.
@drpatelh
Copy link
Member

Thanks for reporting @FranBonath 👍
Will be fixed in #12

drpatelh pushed a commit that referenced this issue Aug 26, 2020
@cying111
Merge pull request #11 from yuukiiwa/dev
926ea19 
solve nf-core/nanoseq merge conflict
drpatelh pushed a commit that referenced this issue Dec 18, 2020
@yuukiiwa
Merge pull request #11 from nf-core/dev
30e862c 
Dev
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@drpatelh @FranBonath