deactivated ssl verification to avoid download error

nf-core · Aug 26, 2022 · cb64a35 · cb64a35
1 parent 01fbbca
commit cb64a35
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Showing 8 changed files with 8 additions and 8 deletions.
diff --git a/bin/download_alphafold_params.sh b/bin/download_alphafold_params.sh
@@ -35,7 +35,7 @@ SOURCE_URL="https://storage.googleapis.com/alphafold/alphafold_params_2022-03-02
 BASENAME=$(basename "${SOURCE_URL}")
 
 mkdir --parents "${ROOT_DIR}"
-aria2c "${SOURCE_URL}" --dir="${ROOT_DIR}"
+aria2c "${SOURCE_URL}" --check-certificate=false --dir="${ROOT_DIR}"
 tar --extract --verbose --file="${ROOT_DIR}/${BASENAME}" \
     --directory="${ROOT_DIR}" --preserve-permissions
 rm "${ROOT_DIR}/${BASENAME}"
diff --git a/bin/download_bfd.sh b/bin/download_bfd.sh
@@ -37,7 +37,7 @@ SOURCE_URL="https://storage.googleapis.com/alphafold-databases/casp14_versions/b
 BASENAME=$(basename "${SOURCE_URL}")
 
 mkdir --parents "${ROOT_DIR}"
-aria2c "${SOURCE_URL}" --dir="${ROOT_DIR}"
+aria2c "${SOURCE_URL}" --check-certificate=false --dir="${ROOT_DIR}"
 tar --extract --verbose --file="${ROOT_DIR}/${BASENAME}" \
     --directory="${ROOT_DIR}"
 rm "${ROOT_DIR}/${BASENAME}"
diff --git a/bin/download_mgnify.sh b/bin/download_mgnify.sh
@@ -37,7 +37,7 @@ SOURCE_URL="https://storage.googleapis.com/alphafold-databases/casp14_versions/m
 BASENAME=$(basename "${SOURCE_URL}")
 
 mkdir --parents "${ROOT_DIR}"
-aria2c "${SOURCE_URL}" --dir="${ROOT_DIR}"
+aria2c "${SOURCE_URL}" --check-certificate=false --dir="${ROOT_DIR}"
 pushd "${ROOT_DIR}"
 gunzip "${ROOT_DIR}/${BASENAME}"
 popd
diff --git a/bin/download_pdb70.sh b/bin/download_pdb70.sh
@@ -36,7 +36,7 @@ SOURCE_URL="http://wwwuser.gwdg.de/~compbiol/data/hhsuite/databases/hhsuite_dbs/
 BASENAME=$(basename "${SOURCE_URL}")
 
 mkdir --parents "${ROOT_DIR}"
-aria2c "${SOURCE_URL}" --dir="${ROOT_DIR}"
+aria2c "${SOURCE_URL}" --check-certificate=false --dir="${ROOT_DIR}"
 tar --extract --verbose --file="${ROOT_DIR}/${BASENAME}" \
     --directory="${ROOT_DIR}"
 rm "${ROOT_DIR}/${BASENAME}"
diff --git a/bin/download_pdb_seqres.sh b/bin/download_pdb_seqres.sh
@@ -35,4 +35,4 @@ SOURCE_URL="ftp://ftp.wwpdb.org/pub/pdb/derived_data/pdb_seqres.txt"
 BASENAME=$(basename "${SOURCE_URL}")
 
 mkdir --parents "${ROOT_DIR}"
-aria2c "${SOURCE_URL}" --dir="${ROOT_DIR}"
+aria2c "${SOURCE_URL}" --check-certificate=false --dir="${ROOT_DIR}"
diff --git a/bin/download_small_bfd.sh b/bin/download_small_bfd.sh
@@ -35,7 +35,7 @@ SOURCE_URL="https://storage.googleapis.com/alphafold-databases/reduced_dbs/bfd-f
 BASENAME=$(basename "${SOURCE_URL}")
 
 mkdir --parents "${ROOT_DIR}"
-aria2c "${SOURCE_URL}" --dir="${ROOT_DIR}"
+aria2c "${SOURCE_URL}" --check-certificate=false --dir="${ROOT_DIR}"
 pushd "${ROOT_DIR}"
 gunzip "${ROOT_DIR}/${BASENAME}"
 popd
diff --git a/bin/download_uniclust30.sh b/bin/download_uniclust30.sh
@@ -37,7 +37,7 @@ SOURCE_URL="https://storage.googleapis.com/alphafold-databases/casp14_versions/u
 BASENAME=$(basename "${SOURCE_URL}")
 
 mkdir --parents "${ROOT_DIR}"
-aria2c "${SOURCE_URL}" --dir="${ROOT_DIR}"
+aria2c "${SOURCE_URL}" --check-certificate=false --dir="${ROOT_DIR}"
 tar --extract --verbose --file="${ROOT_DIR}/${BASENAME}" \
     --directory="${ROOT_DIR}"
 rm "${ROOT_DIR}/${BASENAME}"
diff --git a/bin/download_uniref90.sh b/bin/download_uniref90.sh
@@ -35,7 +35,7 @@ SOURCE_URL="ftp://ftp.uniprot.org/pub/databases/uniprot/uniref/uniref90/uniref90
 BASENAME=$(basename "${SOURCE_URL}")
 
 mkdir --parents "${ROOT_DIR}"
-aria2c "${SOURCE_URL}" --dir="${ROOT_DIR}"
+aria2c "${SOURCE_URL}" --check-certificate=false --dir="${ROOT_DIR}"
 pushd "${ROOT_DIR}"
 gunzip "${ROOT_DIR}/${BASENAME}"
 popd