try a retry with more memory

nf-core · May 2, 2024 · eee7818 · eee7818
1 parent ecd6286
commit eee7818
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/conf/modules/align_bwa_bwamem2.config b/conf/modules/align_bwa_bwamem2.config
@@ -23,7 +23,7 @@ process {
             ext.args = { "-M -K 100000000 -R ${meta.read_group}" }
             ext.prefix = { "${meta.id}_sorted" }
             ext.when = { params.aligner.equals("bwamem2") }
-            errorStrategy = { task.exitStatus in (1 + (130..145) + 104) ? 'retry' : 'finish' }
+            errorStrategy = { task.exitStatus in (1, (130..145), 104) ? 'retry' : 'finish' }
         }
 
         withName: '.*ALIGN:ALIGN_BWA_BWAMEM2:BWA_MEM' {