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Get rid of custom images #44

Merged
merged 7 commits into from
May 29, 2024
Merged

Get rid of custom images #44

merged 7 commits into from
May 29, 2024

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JoseEspinosa
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  • This comment contains a description of changes (with reason).
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).

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github-actions bot commented May 28, 2024 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit f5a0975

+| ✅ 212 tests passed       |+
#| ❔  20 tests were ignored |#
!| ❗  10 tests had warnings |!

❗ Test warnings:

  • readme - README contains the placeholder zenodo.XXXXXXX. This should be replaced with the zenodo doi (after the first release).
  • pipeline_todos - TODO string in README.md: Add citation for pipeline after first release. Uncomment lines below and update Zenodo doi and badge at the top of this file.
  • pipeline_todos - TODO string in usage.md: Add documentation about anything specific to running your pipeline. For general topics, please point to (and add to) the main nf-core website.
  • pipeline_todos - TODO string in main.nf: Optionally add in-text citation tools to this list.
  • pipeline_todos - TODO string in main.nf: Optionally add bibliographic entries to this list.
  • pipeline_todos - TODO string in main.nf: Only uncomment below if logic in toolCitationText/toolBibliographyText has been filled!
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your preferred methods description, e.g. add publication citation for this pipeline
  • pipeline_todos - TODO string in awsfulltest.yml: You can customise AWS full pipeline tests as required
  • pipeline_todos - TODO string in base.config: Check the defaults for all processes
  • pipeline_todos - TODO string in base.config: Customise requirements for specific processes.

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 2.14.1
  • Run at 2024-05-29 16:37:16

luisas
luisas approved these changes May 29, 2024
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LGTM

itrujnara
itrujnara approved these changes May 29, 2024
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Nice, I love Wave

@JoseEspinosa JoseEspinosa marked this pull request as ready for review May 29, 2024 14:14
@JoseEspinosa JoseEspinosa merged commit e967db0 into nf-core:dev May 29, 2024
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@luisas luisas luisas approved these changes

@itrujnara itrujnara itrujnara approved these changes

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@JoseEspinosa @luisas @itrujnara