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Change STAR mapping failure string #290

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drpatelh opened this issue Sep 26, 2019 · 1 comment
Closed

Change STAR mapping failure string #290

drpatelh opened this issue Sep 26, 2019 · 1 comment
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@drpatelh
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Will need to change the description in the line below to something like "poor mapping percentage (<5%)". Alignment scores do actually exist but they are used to represent the quality of the mapping of individual reads. Best not to mix up the two.

rnaseq/main.nf

Line 1652 in ae59ed2

log.info "${c_purple}[nf-core/rnaseq]${c_red} WARNING - ${skipped_poor_alignment.size()} samples skipped due to poor alignment scores!${c_reset}"

@drpatelh drpatelh added the first-timers-only Good for newcomers label Sep 26, 2019
@apeltzer apeltzer added this to the 1.4 milestone Oct 2, 2019
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apeltzer commented Oct 2, 2019

x-ref #296

@drpatelh drpatelh closed this as completed Oct 2, 2019
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