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Make scrnaseq pipeline v2.5.1 compatible with nextflow v22.04.0 #308

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asmaali98 opened this issue Feb 27, 2024 · 1 comment
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Make scrnaseq pipeline v2.5.1 compatible with nextflow v22.04.0 #308

asmaali98 opened this issue Feb 27, 2024 · 1 comment
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enhancement New feature or request

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@asmaali98
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Hi, is there any way to make the nf-core/scrnaseq v2.5.1 compatible with the nextflow v22.04.0 by implementing any changes? Has anyone tried this before? Is there any script changes that I can add to make it compatible?

@asmaali98 asmaali98 added the enhancement New feature or request label Feb 27, 2024
@grst
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grst commented Mar 5, 2024

Since the nf-core template version 2.9 Nextflow 23.04 is officially required. This was probably mostly due to introducing the nf-validation plugin which is not used by this pipeline yet.

Have you tried just removing this line from the nextflow.config?

nextflowVersion = '!>=23.04.0'

We will, however, not try to support older versions of nextflow, therefore, I'm closing this ticket. If you need more help getting to run this on legacy systems, I think slack is the better place to ask for help.

@grst grst closed this as completed Mar 5, 2024
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