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PR for 1.1.0 release #52

Merged
merged 82 commits into from
Mar 29, 2021
Merged

PR for 1.1.0 release #52

merged 82 commits into from
Mar 29, 2021

Commits on Dec 21, 2019

  1. Bump & fix #20

    @apeltzer
    apeltzer committed Dec 21, 2019
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  2. Fix issue #21 , supply index

    @apeltzer
    apeltzer committed Dec 21, 2019
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  3. Add changelog

    @apeltzer
    apeltzer committed Dec 21, 2019
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  4. Fix test for star index

    @apeltzer
    apeltzer committed Dec 21, 2019
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  5. Fix condition

    @apeltzer
    apeltzer committed Dec 21, 2019
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  6. Fix star checks

    @apeltzer
    apeltzer committed Dec 21, 2019
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Commits on Jan 12, 2020

  1. Logic fixes

    @apeltzer
    apeltzer committed Jan 12, 2020
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  2. Fix for transcriptome fasta

    @apeltzer
    apeltzer committed Jan 12, 2020
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Commits on Feb 11, 2020

  1. Bump to 1.0.2dev and small bugfixes for docs

    @apeltzer
    apeltzer committed Feb 11, 2020
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  2. Merge pull request #22 from apeltzer/dev 

    PR for 1.0.1 Bugfixes
    @apeltzer
    apeltzer committed Feb 11, 2020
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  3. Merge remote-tracking branch 'upstream/dev' into fix-minor-mistakes

    @apeltzer
    apeltzer committed Feb 11, 2020
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Commits on Feb 12, 2020

  1. add social preview image

    @maxulysse
    maxulysse committed Feb 12, 2020
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  2. Merge pull request #28 from MaxUlysse/dev 

    Add social preview image
    @apeltzer
    apeltzer committed Feb 12, 2020
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  3. Template update for nf-core/tools version 1.8

    @apeltzer
    apeltzer committed Feb 12, 2020
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  4. Merge branch 'TEMPLATE' into fix-minor-mistakes

    @apeltzer
    apeltzer committed Feb 12, 2020
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  5. Fix config mistake

    @apeltzer
    apeltzer committed Feb 12, 2020
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  6. Fixing all the small things

    @apeltzer
    apeltzer committed Feb 12, 2020
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  7. Fix channel

    @apeltzer
    apeltzer committed Feb 12, 2020
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Commits on Feb 20, 2020

  1. Template update for nf-core/tools version 1.9

    runner committed Feb 20, 2020
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Commits on Mar 4, 2020

  1. Merge pull request #26 from apeltzer/fix-minor-mistakes 

    Bump to 1.0.2dev and small bugfixes for docs
    @apeltzer
    apeltzer committed Mar 4, 2020
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Commits on Mar 6, 2020

  1. Merge branch 'TEMPLATE' into dev

    @apeltzer
    apeltzer committed Mar 6, 2020
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  2. Update main.nf 

    Fix thanks to @santiago
    @apeltzer
    apeltzer committed Mar 6, 2020
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Commits on Jul 30, 2020

  1. Template update for nf-core/tools version 1.10.1

    @nf-core-bot
    nf-core-bot committed Jul 30, 2020
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Commits on Jul 31, 2020

  1. Template update for nf-core/tools version 1.10.2

    @nf-core-bot
    nf-core-bot committed Jul 31, 2020
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Commits on Oct 27, 2020

  1. Template update for nf-core/tools version 1.11

    @nf-core-bot
    nf-core-bot committed Oct 27, 2020
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Commits on Nov 12, 2020

  1. Merge branch 'TEMPLATE' into dev

    @apeltzer
    apeltzer committed Nov 12, 2020
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  2. Merge branch 'dev' of https://github.com/nf-core/scrnaseq into dev

    @apeltzer
    apeltzer committed Nov 12, 2020
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  3. Merge remote-tracking branch 'origin/TEMPLATE' into dev

    @apeltzer
    apeltzer committed Nov 12, 2020
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Commits on Nov 19, 2020

  1. Template update for nf-core/tools version 1.12

    @nf-core-bot
    nf-core-bot committed Nov 19, 2020
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Commits on Dec 3, 2020

  1. Template update for nf-core/tools version 1.12.1

    @nf-core-bot
    nf-core-bot committed Dec 3, 2020
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Commits on Mar 18, 2021

  1. Template update for nf-core/tools version 1.13

    @nf-core-bot
    nf-core-bot committed Mar 18, 2021
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Commits on Mar 19, 2021

  1. Template update for nf-core/tools version 1.13.1

    @nf-core-bot
    nf-core-bot committed Mar 19, 2021
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Commits on Mar 22, 2021

  1. updates the json schema

    @sk-sahu
    sk-sahu committed Mar 22, 2021
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  2. adds additional params

    @sk-sahu
    sk-sahu committed Mar 22, 2021
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  3. minor fix

    @sk-sahu
    sk-sahu committed Mar 22, 2021
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  4. Merge remote-tracking branch 'origin/nf-core-template-merge-1.13.1' i… 

    …nto fix-json-schema
    @apeltzer
    apeltzer committed Mar 22, 2021
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  5. Attempt fixing markdownlinter

    @apeltzer
    apeltzer committed Mar 22, 2021
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  6. Fix licence

    @apeltzer
    apeltzer committed Mar 22, 2021
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  7. updates schema

    @sk-sahu
    sk-sahu committed Mar 22, 2021
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  8. fixes few params with old names

    @sk-sahu
    sk-sahu committed Mar 22, 2021
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  9. Fix licence

    @apeltzer
    apeltzer committed Mar 22, 2021
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  10. adds missing config

    @sk-sahu
    sk-sahu committed Mar 22, 2021
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  11. Merge branch 'fix-json-schema' of https://github.com/nf-core/scrnaseq … 

    …into fix-json-schema
    @sk-sahu
    sk-sahu committed Mar 22, 2021
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  12. Try fixing some more issues

    @apeltzer
    apeltzer committed Mar 22, 2021
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  13. Update .github/workflows/ci.yml 

    Co-authored-by: Gisela Gabernet <gisela.gabernet@gmail.com>
    @apeltzer @ggabernet
    apeltzer and ggabernet committed Mar 22, 2021
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  14. Changed permissions accordingly

    @apeltzer
    apeltzer committed Mar 22, 2021
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  15. Fix all permissions

    @apeltzer
    apeltzer committed Mar 22, 2021
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  16. Fix software versions

    @apeltzer
    apeltzer committed Mar 22, 2021
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  17. nextflow version bump

    @sk-sahu
    sk-sahu committed Mar 22, 2021
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  18. removes table of contents from docs/usage.md 

    Co-authored-by: Gisela Gabernet <gisela.gabernet@gmail.com>
    @sk-sahu @ggabernet
    sk-sahu and ggabernet committed Mar 22, 2021
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  19. Merge branch 'fix-json-schema' of https://github.com/nf-core/scrnaseq … 

    …into fix-json-schema
    @sk-sahu
    sk-sahu committed Mar 22, 2021
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  20. Fix multiqc

    @apeltzer
    apeltzer committed Mar 22, 2021
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  21. Merge branch 'fix-json-schema' of https://github.com/nf-core/scrnaseq … 

    …into fix-json-schema
    @apeltzer
    apeltzer committed Mar 22, 2021
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  22. Update docs/usage.md 

    Co-authored-by: Gisela Gabernet <gisela.gabernet@gmail.com>
    @sk-sahu @ggabernet
    sk-sahu and ggabernet committed Mar 22, 2021
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  23. markdown lint fix

    @sk-sahu
    sk-sahu committed Mar 22, 2021
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  24. Add some more to gitignore

    @apeltzer
    apeltzer committed Mar 22, 2021
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  25. Merge branch 'fix-json-schema' of https://github.com/nf-core/scrnaseq … 

    …into fix-json-schema
    @apeltzer
    apeltzer committed Mar 22, 2021
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  26. Add in save_reference

    @apeltzer
    apeltzer committed Mar 22, 2021
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  27. Apparently needs pandoc

    @apeltzer
    apeltzer committed Mar 22, 2021
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  28. fixes template_strings error

    @sk-sahu
    sk-sahu committed Mar 22, 2021
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  29. adds new param to josn schema

    @sk-sahu
    sk-sahu committed Mar 22, 2021
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  30. makes input param as optional because of input_path in somecase

    @sk-sahu
    sk-sahu committed Mar 22, 2021
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Commits on Mar 23, 2021

  1. Update environment.yml

    @apeltzer
    apeltzer committed Mar 23, 2021
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  2. nf-core lint auto fixes conda_env_yam

    @sk-sahu
    sk-sahu committed Mar 23, 2021
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  3. Explicit conda channel for pandoc 

    Co-authored-by: Gisela Gabernet <gisela.gabernet@gmail.com>
    @sk-sahu @ggabernet
    sk-sahu and ggabernet committed Mar 23, 2021
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  4. hacky solution for enviroment

    @sk-sahu
    sk-sahu committed Mar 23, 2021
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  5. Merge pull request #47 from nf-core/fix-json-schema 

    JSON Schema + latest 1.13.1 template
    @apeltzer
    apeltzer committed Mar 23, 2021
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  6. Template update for nf-core/tools version 1.13.2

    @nf-core-bot
    nf-core-bot committed Mar 23, 2021
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Commits on Mar 24, 2021

  1. Merge branch 'dev' into nf-core-template-merge-1.13.2

    @sk-sahu
    sk-sahu committed Mar 24, 2021
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  2. lint fix

    @sk-sahu
    sk-sahu committed Mar 24, 2021
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  3. Merge pull request #49 from nf-core/nf-core-template-merge-1.13.2 

    Important! Template update for nf-core/tools v1.13.2
    @ggabernet
    ggabernet committed Mar 24, 2021
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  4. version bump from v1.0.1dev -> v1.1

    @sk-sahu
    sk-sahu committed Mar 24, 2021
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  5. change log added

    @sk-sahu
    sk-sahu committed Mar 24, 2021
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  6. minor markfown lint fix

    @sk-sahu
    sk-sahu committed Mar 24, 2021
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  7. version 1.1 -> 1.1.0

    @sk-sahu
    sk-sahu committed Mar 24, 2021
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  8. Update CHANGELOG.md 

    Co-authored-by: Gisela Gabernet <gisela.gabernet@gmail.com>
    @sk-sahu @ggabernet
    sk-sahu and ggabernet committed Mar 24, 2021
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  9. Merge pull request #51 from sk-sahu/dev 

    For minor release V1.1
    @apeltzer
    apeltzer committed Mar 24, 2021
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Commits on Mar 25, 2021

  1. Template update for nf-core/tools version 1.13.3

    @nf-core-bot
    nf-core-bot committed Mar 25, 2021
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Commits on Mar 26, 2021

  1. Merge branch 'dev' into nf-core-template-merge-1.13.3

    @apeltzer
    apeltzer committed Mar 26, 2021
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  2. Merge pull request #53 from nf-core/nf-core-template-merge-1.13.3 

    Important! Template update for nf-core/tools v1.13.3
    @sk-sahu
    sk-sahu committed Mar 26, 2021
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  3. all the docs removed from usage.md and moved to json schema

    @sk-sahu
    sk-sahu committed Mar 26, 2021
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  4. Merge pull request #54 from nf-core/move-params 

     All the docs removed from usage.md and moved to json schema
    @sk-sahu
    sk-sahu committed Mar 26, 2021
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