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Auto-detect multiple runs of the same sample on SRA #56

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drpatelh opened this issue Apr 17, 2020 · 1 comment
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Auto-detect multiple runs of the same sample on SRA #56

drpatelh opened this issue Apr 17, 2020 · 1 comment
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enhancement Improvement for existing functionality

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@drpatelh
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drpatelh commented Apr 17, 2020 •
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The pipeline currently performs the analysis for these separately but it would be good if we can aggregate these by some sort of SRA id so that they are merged at some point in the pipeline. The functionality to do this would have to be added to this script:
https://github.com/nf-core/viralrecon/blob/dev/bin/check_samplesheet.py

e.g. searching for SRR390277 returns these two SRA entries:

GSM847774: Kc167_Sin3A_ChIPSeq_1 and 2	SRR390277	Illumina Genome Analyzer	10386	15 Dec 2011
GSM847774: Kc167_Sin3A_ChIPSeq_1 and 2	SRR390278	Illumina Genome Analyzer	7910	15 Dec 2011
@drpatelh drpatelh added the enhancement Improvement for existing functionality label Apr 17, 2020
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Added in #68

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