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1. GINFINITY GINFINITY Public

   Graph Isomorphism Network (GIN) for generating embeddings of RNA secondary structures and enabling efficient similarity searches

   Jupyter Notebook

2. OT-2-WGene-Porotocols OT-2-WGene-Porotocols Public

   GUI for designing protocols for production of SARS-CoV-2 WGene RT Detection kit.

   Python

3. FinAl-ReSi FinAl-ReSi Public

   Find and Align Restriction Sites - Pipeline to find specific restriction/nicking sites on a target and assess conservation among strains/variants

   Python

4. embeddings_app embeddings_app Public

   Dash app to see the tSNE projection of embeddings of RNA secondary structures

   Python

5. StrusiNet2 StrusiNet2 Public

   A Siamese Deep Neural Network to compute RNA secondary structure embeddings

   Jupyter Notebook 1 2

6. CAS-EXPAR-Designer CAS-EXPAR-Designer Public

   A tool for designing oligo sequences for a CAS-EXPAR reaction using machine learning to predict EXPAR performance.

   Jupyter Notebook