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  1. GINFINITY GINFINITY Public

    Graph Isomorphism Network (GIN) for generating embeddings of RNA secondary structures and enabling efficient similarity searches

    Jupyter Notebook

  2. OT-2-WGene-Porotocols OT-2-WGene-Porotocols Public

    GUI for designing protocols for production of SARS-CoV-2 WGene RT Detection kit.

    Python

  3. FinAl-ReSi FinAl-ReSi Public

    Find and Align Restriction Sites - Pipeline to find specific restriction/nicking sites on a target and assess conservation among strains/variants

    Python

  4. embeddings_app embeddings_app Public

    Dash app to see the tSNE projection of embeddings of RNA secondary structures

    Python

  5. StrusiNet2 StrusiNet2 Public

    A Siamese Deep Neural Network to compute RNA secondary structure embeddings

    Jupyter Notebook 1 2

  6. CAS-EXPAR-Designer CAS-EXPAR-Designer Public

    A tool for designing oligo sequences for a CAS-EXPAR reaction using machine learning to predict EXPAR performance.

    Jupyter Notebook