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GINFINITY
GINFINITY PublicGraph Isomorphism Network (GIN) for generating embeddings of RNA secondary structures and enabling efficient similarity searches
Jupyter Notebook
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OT-2-WGene-Porotocols
OT-2-WGene-Porotocols PublicGUI for designing protocols for production of SARS-CoV-2 WGene RT Detection kit.
Python
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FinAl-ReSi
FinAl-ReSi PublicFind and Align Restriction Sites - Pipeline to find specific restriction/nicking sites on a target and assess conservation among strains/variants
Python
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embeddings_app
embeddings_app PublicDash app to see the tSNE projection of embeddings of RNA secondary structures
Python
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StrusiNet2
StrusiNet2 PublicA Siamese Deep Neural Network to compute RNA secondary structure embeddings
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CAS-EXPAR-Designer
CAS-EXPAR-Designer PublicA tool for designing oligo sequences for a CAS-EXPAR reaction using machine learning to predict EXPAR performance.
Jupyter Notebook
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