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ENH: Make bids default output layout #130

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Merged
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Oct 11, 2021
Merged

ENH: Make bids default output layout #130

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8 changes: 4 additions & 4 deletions nibabies/cli/parser.py
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Original file line number Diff line number Diff line change
Expand Up @@ -474,12 +474,12 @@ def _bids_filter(value):
g_other.add_argument(
"--output-layout",
action="store",
default="legacy",
default="bids",
choices=("bids", "legacy"),
help="Organization of outputs. legacy (default) creates derivative "
"datasets as subdirectories of outputs. bids places NiBabies derivatives "
help="Organization of outputs. bids (default) places NiBabies derivatives "
"directly in the output directory, and defaults to placing FreeSurfer "
"derivatives in <output-dir>/sourcedata/freesurfer.",
"derivatives in <output-dir>/sourcedata/freesurfer. legacy creates derivative "
"datasets as subdirectories of outputs."
)
g_other.add_argument(
"-w",
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