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bugSomething isn't workingSomething isn't working
Description
What happened?
When the model isn't present, the interface only crashes when the output mask is being "aggregated" (by nipype) and evidently it's not found where expected.
What command did you use?
n/a
What version of the software are you running?
nifreeze
How are you running this software?
Local installation ("bare-metal")
Is your data BIDS valid?
Yes
Are you reusing any previously computed results?
No
Please copy and paste any relevant log output.
FileNotFoundError Traceback (most recent call last)
Cell In[4], line 19
14 if not bmask_path.exists():
15 bmsk_results = SynthStrip(
16 in_file=str(avg_path),
17 use_gpu=True,
18 ).run(cwd=str(WORKDIR))
---> 19 copy(bmsk_results.outputs.out_mask,bmask_path)
(...)
FileNotFoundError: [Errno 2] No such file or directory:
'/home/runner/tmp/nifreezedev/ismrm25/sub-01_task-mixedgamblestask_run-03_boldref_desc-brain_mask.nii.gz'
Additional information / screenshots
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bugSomething isn't workingSomething isn't working