git clone https://github.com/noriakis/ckegg
cd ckegg && mkdir build
cmake -S . -B build
cmake --build buildIf you specify file name ending with .xml to -p, read from the local.
Usage: ckegg aa [options]
Options: -p CHAR KEGG PATHWAY ID
-x INT Width of AA [100]
-y INT Height of AA [50]
-s Show node names
-n No node mode, useful for ko01100
-f CHAR File describing ID (one line per ID, no prefix in KO like [ko:])
Description of characters in AA:
c: #B3B3E6 Carbohydrate metabolism [Amino sugar and nucleotide sugar metabolism]
s: #F06292 Biosynthesis of other secondary metabolites [Biosynthesis of various secondary metabolites - part 2]
v: #FFB3CC Metabolism of cofactors and vitamins [Biosynthesis of cofactors]
n: #FF8080 Nucleotide metabolism [Purine metabolism]
C: #6C63F6 Carbohydrate metabolism [Glycolysis / Gluconeogenesis]
a: #FFCC66 Amino acid metabolism [Biosynthesis of amino acids]
l: #80CCB3 Lipid metabolism [Glycerolipid metabolism]
x: #DA8E82 Xenobiotics biodegradation and metabolism [Degradation of aromatic compounds]
L: #80CCCC Lipid metabolism [Fatty acid metabolism]
t: #9EE284 Metabolism of terpenoids and polyketides [Biosynthesis of 12-, 14- and 16-membered macrolides]
g: #99CCFF Glycan biosynthesis and metabolism [Various types of N-glycan biosynthesis]
o: #FF9900 Metabolism of other amino acids [Glutathione metabolism]
e: #CC99FF Energy metabolism [Oxidative phosphorylation]
r: #8080F7 Carbohydrate metabolism [Citrate cycle (TCA cycle)]
ckegg aa -pko01100 -n
g g ggg ggg g gg gg g ggg g
g g gggggg gg gggg g g gg ggggg gg gg gg n n v
gggggggg g g g g g g ggg gg ggg gc gggg g ggg n n n nn vvv vvv
g ggg g g g g g g gg g g ggg g gg gg gggggggggggsggggnnnnn nnn nnnnnnv v
gg gggg g gggggg ggggg ggggggggg g gggggggggg gggg s nnnnnnnnnnnnn nvvvv
gg ggg g g g gg ggggg gg ggcggc gggggggggggngg nggn gnnn nnn n nn nnsnsn nvvvv
g l l g ggggcgggggg gg g cggggg g g gg gnn n nnnnnnnnnsnsnsnvv vvvvvvv v
g l ttt t gggg ggggcggccccc cc cc cgggcggcnngn snnn nn nnnnssssss v vvvvvvvv v
s ss ss sssstss sgg ggg gg gggccgccccccccccgcgg gcgg gnnnnnnnnnssnsssvvvs s vsvvv vvv
s ss ss tt ttsgggg gggggggccccccccc cccccccc ccccgccc n nnnn nsss sssv vv s sv vv v
t ttt t sgsss gglgclcccccc cccccccccccccCCcc c cnnn nnn nnn v vnvv v vvvvvv vvs
tt ttt ttt tttt ttttttstggg glllclscccccccccccccccccc c ccccccnnnnnnnns sn n vvvvvvvs svvvv v vs
tt t ss sst tttttst sssclcclcgcccc cc cccccccccCCnccccc nnnnnnn v vvvvsssssv vvvvvvs
tttt ttt ttt t ttttttttggggggll c g cccccccc cccccccCCcCccccnnnn ntntsaassassss ssv sssssssvvsv vs
ttttt ttt t lllllllllllllllll l cccccccccCcCCcCcCCCCCg o nnnnnnssaoooaa a vvvvvsv ss s s s
ttttt ttt tt l lll l ll llclc lcccccCCCCCcCcCcCcccc nnnaaaaasnnsoaasas vvss sssssssssss
sttttt ttttt tt lltllllllllllllllllllclccccccclccCC CccCCcccc aaeasssaaanaav aaaaassvsvsvsssss ssss
st s lltlll lllllllll llllccccccccccC C rcCCCca aaaaaaaaaa aaan aaa asvsssssssssssssss
t s s tllllllll ll l llccccccccccCcCCrgrrCCCcaeae aeaaaaaaaaaanvaavavv vv vv s ssssssss
tttttttttttstttt tltlllll ll llll lc cccccccccccCcCccgscsaaaeeaaaaaaaaaaavvsvvsvvvvvv v ssss sssss
t vvtvvvv vv tt tttl ttttttlll lllcccccc cccccCcnCco ooaae neeoaaovxoaaavas vvsvvvvvsvvcvvvsvvs s
ttttttv ttttttt ttLLtttLlllllll cclctcccLccccccCacccnnooseaeeeeaavoao anaa vvv vvvvvv s vv sss s
tt tttttttttttt ttLL LLLlllll tccc cccclcccccCCtclcca clteeeeaeaaaaa acaaa v vvvvvavcssvsvs ssss
ttt tttttt tt t ttLLLLLLLLLLLLLLLLLLLLLLlccLLcC e CxxCCxxeaaa aaaaaooaa aaaaav vvvaa asv v vvs
ttt ttt ttttttttt LLLLLLLLLLLLLc ccccccoooooxooc aaacaaaaaaaanaa aaaaavvavvavaavv vv s
ttt tttt t ttttttttLLL L LLLL LL ccccC eelCaaaccaeaaaaaaa aanaa na vvvvvvssvavvv v v vs
tt tt t t tttt tL LLL LLLL cc LLLL LLt ccccaaCCCCaaoxxaoasaanaaaaanaana vavvvvvasa s vv sss
tt sttt t t LLLLLL LLLL Lc t c ccxccxo coaaaaeaaaaaaa saaavvvv vvvsvvvvss svvv v
stttt tt LLL LLcLLLLLLLLllccLcLCcCcaaaaa Lccaceaa aaaaaaaaaaaaaaavsvavsvs v v s
ssss t tttsst tt t tLLLLLLLLLLa cvL LLta ceceeac cLacLtaaeaaaaasaanaanvav avaavavavvvvv vvv vs
ssssssstttttstttttt tttLttLLt LctvtLxx cta c CCnnc caaastacaaaaaaaaaeeenaaa aaoaaaaa v s
t tttttttttt tt LLLL LLLLvvvcc xxxx ex xCCCCCCCcaaaa aaaa aaeaeeaaeeenaaa asaaaasaaa ss v s
tttsttttsttttt L LtL LtLttxxc x x eccac CcaeccCCaaaaa oaaaaaaaaeaaeneaeaaaaaosoasaaa ss v s
t ssstttttvvtL LL LLLL L L xxxxx x eceaaCcccccacCococsoaaaxaaaavananeeaaaaaaaaao o ss sss s s s
s st t tvvvL LL LLLL L xxxxx xae c cCcccccaaCCca coaeoaaaaccaa eeeaaaa aa ssvavss sss sss s
s st t tvvvL LL LLL LLLLLxxx x x e CCaaccc CC a a aaaaaaaoaaaa aaaaaaaaosvsvvvv sss s s
s st t tvvvL LL LLLxLLxxLLxxx xxxec c cCCaccaCCCa ao aaa a caa aaoaaaaa saav v v ss s s
s t t vvvLLLL aa x xxxLxx x xex xeeeCCCCae xacaoaa aooaoao aoasaa aasv vvv v vv s
st t v vLLLL LLxLLx xxx xxxxxxxex eceeee axeccaasoaaaaaaa eaoaaaaaasvaoasvvaLs v ss s
t t t xxLLaLLxLLxx xxxxxx xxx x eeeec eccc xexaxxxaax oooooovvave vsaaaasvva a s
t t t tLLLLLLLLLxx xxx x xxe ca aevca axaaa sooo xo o a vvsvv oosoao v
t t tt t LLLLL LL xxxx xxaeeexaaee aa a axasssaoaoaa aa svvvo vvav oso oa
tttttt txxLLLLxxLxx xxxxx xxxx aeeeeeeeeexeeeex x ss aoaaoaoo osoooosss vsvsssvvsvv
tttt xxxxx x x xxxxx x xx xeeee eecxee exaxasxxaxxaaaoavvvv vvsv vvsvssvvss
t x xx x xxx x x eeeee e ecxecce xo xao aavvovvvvssx vs s v
x xx x xxxx xxx e ee e ee eeeexs ss x xx o o o ss s ss ss ss
x xxx xxxx x xxx x xx xx eeeeeeeeexe ex a s vvo o o ov xxsx v v
x xx x xxx xa eeeeee eeeeeeeexxe ee aeeeeeeeea x
xax x x xax eeeee x xeeeexcxxx a xee eeeeea
x xx xx x xeeeee x xeeeeeexxcxxxx eeeeeee
echo K00055 | ckegg aa -pko01100 -f- -x100 -y50 -n
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.. ... ... .... ........... ......................... . ............... .. . ........ ..... . ..
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.... ... ... . ................ . . ........ ................... .............. ... ........... ..
..... ... . ................. . ...................... . .............. . ....... .. . . .
..... ... .. . ... . .. ..... ..................... ...a.............. .... ...........
...... ..... .. ................................... ......... .............. ................. ....
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. ....... .. .. .... ......... ......... ........... ..... ................ ................... .
....... ....... ............... ..................................... .... ... ...... . .. ... .
.. ............ .... ........ .... .................. .............. ..... . .............. ....
... ...... .. . ............................... . ........... ......... ...... ..... ... . ...
... ... ......... .............. ............... ............... ................ .. .
... .... . ........... . .... .. ..... .................. ..... .. ............. . . ..
.. .. . . .... .. ... .... .. .... ... ................................ .......... . .. ...
.. .... . . ...... .... .. . . ....... .............. ........ .......... .... .
..... .. ... ........................... ........ ....................... . . .
.... . ...... .. . ............ ... .... ....... ........................ ............. ... ..
................... ......... ........ ... . ..... ........................ ........ . .
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.............. . ... ........ . . ..... ............. .............................. .. . .
. ............ .. .... . . ..... . ............................................. . .. ... . . .
. .. . ..... .. .... . ..x.. ... . ............. ............. ....... .. ....... ... ... .
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. .. . ..... .. ............x ..... . ........... .. ... . ... ........ .... . . .. . .
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.. . . ..... ...... ... ......... ...... ................ .................... . .. .
. . . ............ .x.... ... . ..... .... .......... ........... .......... . .
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. . .. . ..... .. .... ........... .. . ............ .. ..... .... ... ..
...... ............ ..... .... ................ . .. ........ ......... ...........
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. ... .... . ... . .. x. ........... .. . . ... . . .. .... . .
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... x . ... ..... . .......... . ... ......
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For the pathways other than global map, nodes are represented as characters based on graphics name. If chracters are already used, random character will be assigned.
ckegg aa -phsa03440 -x50 -y20
~
.
% s x m r...i.. t
3 G N &.(..I.
... <
U U z b 0 P . l
7 D A 5 a & S.c....
x
2 b = 8
K _ x 6
q 9 p
L e
4 0
k K
Show the meaning of the characters.
ckegg aa -phsa05230 -y40 -s
}
b T
.
U T o .Y
.
_ L B g 9 ) + q ^ _ p q 4 < .
n I
4 .
L z H
3 W J i G
6
~
l
E... .....R... . ....... r... . ....... A... . ....... a .... . . . . ... . . .M... ......U
. ... . ~
. .. ..
0 Y ) = F V 2 . .. . {
F & p . . . . Y
... . .
. . . ..
' x 2 . . .
.! . . .
.. ..G E 5 z i.. . ...
.. .... ...
. < K U ..... . .....
C S 3 c 7 % 5 o 7 0 .P T ...... .....
G f # . m ..... ......
D d b . ..... . .
| ! & .... . ......
s . 1 ( .. .. .....
D......N & q N 7 .. .....
e..... ....... n . .....
%.............. k.... . ........ t...... ....... O ..... . . . . ..... . h
T . .
A .
S: SLC2A1 C: C00031 c: C00092 0: C00022 3: C00031 G: GCK 6: C00064 2: C00025 1: C00186 s: SLC16A3
L: SLC2A1 _: C00031 9: C00092 q: C00022 B: C00031 g: GCK 4: C00024 z: C00036 5: C00158 x: C00311
z: C00026 U: C00042 m: C00122 &: C00149 b: C00036 l: GLS2 M: MYC Y: MYC I: SIRT6 H: HIF1A
h: HIF1A P: PDHA1 7: C00704 G: C00704 i: SIRT3 p: PKM K: PKM D: LDHAL6A d: PDK1 E: EGFR
R: HRAS r: RAF1 A: MAP2K1 a: MAPK1 e: EGFR %: ERBB2 T: MET k: PIK3CA t: AKT3 O: MTOR
Y: SLC2A1 {: SLC2A2 x: HK1 =: PGAM4 8: PKM K: LDHAL6A 0: PDK1 U: GLS2 (: SIRT3 i: SIRT6
<: HK1 &: C00022 ~: SLC1A5 }: SLC1A5 ~: SLC1A5 n: PDHA1 L: PDK1 3: SLC16A3 7: C00085 ): C00158
): C00085 W: C00186 7: C00074 5: C00197 _: C00074 q: C00197 F: C00065 0: C00037 &: C00097 !: C00665
|: TIGAR D: TP53 o: C00631 %: C00354 ^: C00631 +: C00354 f: PFKL N: PTEN #: PGAM4 E: SCO2
': TP53 U: SCO2 b: TP53 }: SLC7A5 A: C00123 !: G6PD G: TP53 Y: C00024 =: C00311 F: C00026
p: IDH1 T: C00311 o: C00036 <: C00042 4: C00122 J: C00149 q: C00041 N: C00152 n: C00049 V: C00148
2: C00062 T: C00158 ): PFKL T: C00024
echo CDKN2A | ckegg aa -phsa04110 -f- -x60 -y20 -s
. .. .. . . . . . .
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.
. . C .
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. .... ............. . . .
. . . . . .. ...... ..... . .
. U . . . . . ..... .......... ...... .
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. ...... ...... .................. . .....
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. . . . .............
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. . . . . .
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. .
C: CDKN2A F: FZR1 M: MCM2 O: ORC6 A: ANAPC10 a: ANAPC10 S: SKP1 s: SKP1 c: CDK1 B: BUB1B
P: PCNA p: PLK1 T: ATM D: DBF4 m: MAD2L2 b: BUB1 U: BUB3 d: CDC14B Y: YWHAQ f: SFN
H: CHEK1 K: CDKN1A R: PRKDC 2: MDM2 r: CREBBP k: SKP2 y: PKMYT1 W: WEE2 t: PTTG2 E: ESPL1
1: SMC1B _: SKP2 q: RB1 G: GADD45G B: RB1 5: TP53 N: CDKN1B n: CDKN2B g: TGFB1 4: SMAD4
z: SMAD2 7: CDC7 0: CDC20 x: CDC25B z: CDC45 6: CDC6 U: CDC25A 3: GSK3B m: CDK1 &: CCNB3
b: CCNA2 G: CDK7 %: CDK2 Y: CDK2 {: CDK4 h: CCNH x: CCNA2 e: CCNE1 =: CCND1 L: MAD1L1
8: TTK K: CDKN2C 0: CDKN2D U: CDKN2A (: SMC3 i: STAG1 <: RAD21 l: RBL1 &: E2F4 ~: MYC
Z: ZBTB17 }: ABL1 ~: TFDP1 n: E2F1 L: HDAC1 3: RB1 7: RBL1 ): TFDP1 ): E2F4 W: TFDP1
7: NDC80 u: AURKB 5: KNL1 _: MAD2L1BP I: TRIP13 q: SMC1B F: SMC3 X: ATRX 0: NIPBL &: MAU2
!: CDT1 |: MTBP D: TICRR o: ESCO1 o: RAD21 %: STAG1 ^: DDX11 +: SMC1B #: SMC3 E: PDS5B
w: WAPL ': RAD21 U: STAG1 b: CDCA5 }: HDAC8 A: CDK1 !: PLK1 G: SGO1 Y: PPP2CA =: CDKN1A
F: FBXO5 p: TP53
- edge type implementation