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Change to respect the z-orders of objects. The basic idea was instead of just storing the content to be written out to file in an array, maintain it in a dictionary that maps z-order to an array of content for that z-order. Then flatten it into a single content array using the z-order. This flattening does occur a couple times (for example all axes objects must be flattened so they can be book ended by
\begin{axis}
and\end{axis}
correctly.Before, bar charts with error bars were plotted as:

Now:

(The ugliness of these plots are to make sure there is a difference in the hashes, thin error bars weren't working)