Feature/function bug

optinist/Snakefile

@@ -5,8 +5,7 @@ from optinist.api.utils.filepath_creater import join_filepath
 configfile: join_filepath([DIRPATH.ROOT_DIR, 'config.yaml'])
 
 for rule, details in config["rules"].items():
-    rule_file = details["rule_file"]
-    include: rule_file
+    include: details["rule_file"]
 
 rule all:
     input: [join_filepath([DIRPATH.OUTPUT_DIR, x]) for x in config["last_output"]]

optinist/api/snakemake/smk_dir.py

@@ -4,23 +4,29 @@
 
 
 def smk_input(config, name):
+    output_list = []
     for value in config["rules"].values():
         if value["type"] == name:
             if value["type"] in [FILETYPE.IMAGE]:
-                return [
+                output_list.append([
                     join_filepath([DIRPATH.INPUT_DIR, x])
                     for x in value["input"]
-                ]
+                ])
             elif value["type"] in [FILETYPE.CSV, FILETYPE.BEHAVIOR, FILETYPE.HDF5]:
-                return join_filepath([DIRPATH.INPUT_DIR, value["input"]])
+                output_list.append(join_filepath([DIRPATH.INPUT_DIR, value["input"]]))
             else:
-                return [
-                    join_filepath([DIRPATH.OUTPUT_DIR, x])
-                    for x in value["input"]
-                ]
+                output_list.append([
+                    join_filepath([
+                        DIRPATH.OUTPUT_DIR, x
+                    ]) for x in value["input"]
+                ])
+    return output_list
 
 
 def smk_output(config, name):
-    for value in config["rules"].values():
+    output_list = []
+    for key, value in config["rules"].items():
         if value["type"] == name:
-            return join_filepath([DIRPATH.OUTPUT_DIR, value["output"]])
+            output_list.append(join_filepath([DIRPATH.OUTPUT_DIR, value["output"]]))
+
+    return output_list