Add Dataset_ID param to export script

[will-moore]

When exporting a Figure as a new Image in OMERO, this allows us to choose
a Dataset to add the new Image to (instead of using the same Dataset that images in the figure are in).
This isn't supported in the UI yet.

To test:

• This can be tested in the Script menu...
• Open a Figure to export and File -> Export as JSON.
• Select All and Copy the JSON.
• Go to webclient, Run Script -> Figure scripts -> Figure to Pdf
  • Paste the JSON in first field
  • Select Export Option: "OMERO"
  • Enter a Dataset ID
  • Enter a URL in Webclient URI: e.g.http://localhost
• Run Script... Figure should be exported as new Image in the Dataset specified.
• When run without Dataset ID specified, new Image should be put into Dataset from an Image in the figure.

cc @jstitlow

[jstitlow]

Putting them in the image source dataset. Where should the dataset ID be entered?

…

On Tue, Jun 5, 2018 at 9:50 PM, Will Moore ***@***.***> wrote: When exporting a Figure as a new Image in OMERO, this allows us to choose a Dataset to add the new Image to (instead of using the same Dataset that images in the figure are in). This isn't supported in the UI yet. To test: - This can be tested in the Script menu... - Open a Figure to export and File -> Export as JSON. - Select All and Copy the JSON. - Go to webclient, Run Script -> Figure scripts -> Figure to Pdf - Paste the JSON in first field - Select Export Option: "OMERO" - Enter a Dataset ID - Enter a URL in Webclient URI: e.g.http://localhost - Run Script. Figure should be exported as new Image in the Dataset specified. cc @jstitlow <https://github.com/jstitlow> ------------------------------ You can view, comment on, or merge this pull request online at: #296 Commit Summary - Add Dataset_ID param to export script File Changes - *M* omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py <https://github.com/ome/omero-figure/pull/296/files#diff-0> (23) Patch Links: - https://github.com/ome/omero-figure/pull/296.patch - https://github.com/ome/omero-figure/pull/296.diff — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#296>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AFjBBgyKtxwLWfIb3qPcw8kjqCkPX6sxks5t5u8fgaJpZM4UbiOQ> .

[jstitlow]

Of course, it isn't added yet. Sorry.

…

On Tue, Jun 5, 2018 at 9:50 PM, Will Moore ***@***.***> wrote: When exporting a Figure as a new Image in OMERO, this allows us to choose a Dataset to add the new Image to (instead of using the same Dataset that images in the figure are in). This isn't supported in the UI yet. To test: - This can be tested in the Script menu... - Open a Figure to export and File -> Export as JSON. - Select All and Copy the JSON. - Go to webclient, Run Script -> Figure scripts -> Figure to Pdf - Paste the JSON in first field - Select Export Option: "OMERO" - Enter a Dataset ID - Enter a URL in Webclient URI: e.g.http://localhost - Run Script. Figure should be exported as new Image in the Dataset specified. cc @jstitlow <https://github.com/jstitlow> ------------------------------ You can view, comment on, or merge this pull request online at: #296 Commit Summary - Add Dataset_ID param to export script File Changes - *M* omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py <https://github.com/ome/omero-figure/pull/296/files#diff-0> (23) Patch Links: - https://github.com/ome/omero-figure/pull/296.patch - https://github.com/ome/omero-figure/pull/296.diff — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#296>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AFjBBgyKtxwLWfIb3qPcw8kjqCkPX6sxks5t5u8fgaJpZM4UbiOQ> .

[will-moore]

@jstitlow Apologies for dropping this... Is this feature still useful to you?

[jstitlow]

Yes, but this function will mostly be used for programmatic export in our application. Is it already possible to assign a dataset ID when exporting figures from a Python script? Defaulting to the dataset ID of the first image is the ideal default behavior for Figure export. Thanks, j On Sep 24, 2018 05:24, "Will Moore" <notifications@github.com> wrote: @jstitlow <https://github.com/jstitlow> Apologies for dropping this... Is this feature still useful to you? — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#296 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AFjBBtNvnSPy_SpY4HiX7yf4MVkmsb5kks5ueKTXgaJpZM4UbiOQ> .

[will-moore]

@jstitlow Currently there's no support in the released script for specifying a Dataset_ID as a script parameter. The current behaviour is to use the Dataset of the first Image in the figure, and this remains the default in this PR if no Dataset_ID is specified.