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omicscode/README.md

I am responsible for genomic analysis and software development for illumina and long read sequencing approaches. I provide bio-software development, algorithms, bioinformatics, machine learning for Illumina and LongRead sequencing technologies across all species. What i do and what i have done is outlaid below including classification of the programming languages for each task, so that you can have a broader idea of what you are looking into and what i extend. I am specific to the analysis in the areas of RNA-seq and Single cell, Metagenomics and Pangenomics covering all species. Similarly, Biological Machine and Deep learning specific to biological questions and bio-software.
Sequencing specifics:
2010-2021: Plant, Bacterial, Fungi: RNASeq, GenomSeq, Phylogenomics, PacBio Sequencing, Single Cell Analysis, Bio-software.
2021:2023: Machine Learning, Bio-software.
2024: PanGenome, Bio-software.
2025: Human Genomics, Bio-software
Software Development:C++(2010-2021), 2024: RUST.
Web Development: RUST,Svelte
Bioinformatics/Data Analysis/Machine and Deep Learning: Python or R depending on what needs to be used.
RUST release: See the commit tag as final or build release for the release.
Research and Topics and areas, I dont work, read and explore: System Design and Management, GeoInformatics or Machine Learning. I dont do LLMs and RAG based fine tuning models for text analysis or chatbots.

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  1. panscape panscape Public

    reads to genome, pangenome graphs, summarize and analyze

    Rust 2

  2. eVaiutilities eVaiutilities Public

    Genomics population scale utilities for eVai

    Rust 1 2

  3. ensemblcov ensemblcov Public

    genomics utilities for human genomics

    Rust

  4. evaRust evaRust Public

    Rust handler for human and mouse variant search

    Rust 1

  5. bacdive bacdive Public

    bacdive microbial genome informatics

    Rust

  6. sequenceprofiler sequenceprofiler Public

    kmer based sequence profiler for reads and genomes

    Rust