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TASK-2478 #2239

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TASK-2478 #2239

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Commits on Jan 10, 2023

  1. analysis: properly count deletion overlap pairs, #TASK-2478

    @pfurio
    pfurio committed Jan 10, 2023
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Commits on Jan 11, 2023

  1. analysis: exclude missense variants for DEL_OVERLAP, #TASK-2478

    @pfurio
    pfurio committed Jan 11, 2023
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Commits on Jan 18, 2023

  1. analysis: add cts to exclude, #TASK-2478

    @pfurio
    pfurio committed Jan 18, 2023
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Commits on Jan 24, 2023

  1. analysis: calculate missing chPairVariantStats, #TASK-2478

    @pfurio
    pfurio committed Jan 24, 2023
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Commits on Jan 25, 2023

  1. analysis: fix HOM_ALT filters with 2 pop freqs, #TASK-2478

    @pfurio
    pfurio committed Jan 25, 2023
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Commits on Jan 26, 2023

  1. analysis: ensure RGA always have the same behaviour, #TASK-2478 

    When no KnockoutType filters are applied, we internally add all possible
values to the query to ensure we always get the same behaviour.
    @pfurio
    pfurio committed Jan 26, 2023
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  2. analysis: fix aux collection query parser, #TASK-2478

    @pfurio
    pfurio committed Jan 26, 2023
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Commits on Jan 27, 2023

  1. analysis: fix facet queries, #TASK-2478

    @pfurio
    pfurio committed Jan 27, 2023
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Commits on Jan 30, 2023

  1. analysis: fix query parser options, #TASK-2478

    @pfurio
    pfurio committed Jan 30, 2023
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  2. analysis: fix ko filter, #TASK-2478

    @pfurio
    pfurio committed Jan 30, 2023
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Commits on Jan 31, 2023

  1. analysis: improve summary performance, #TASK-2478

    @pfurio
    pfurio committed Jan 31, 2023
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  2. analysis: add cache for RGA, #TASK-1750

    @pfurio
    pfurio committed Jan 31, 2023
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  3. analysis: make map thread-safe, #TASK-1750

    @pfurio
    pfurio committed Jan 31, 2023
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  4. analysis: remove static modifier, #TASK-1750

    @pfurio
    pfurio committed Jan 31, 2023
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  5. analysis: cache only queries taking longer than 4 seconds, #TASK-1750

    @pfurio
    pfurio committed Jan 31, 2023
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  6. analysis: put if absent, #TASK-2478

    @pfurio
    pfurio committed Jan 31, 2023
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Commits on Feb 2, 2023

  1. analysis: count CH variant stats properly, #TASK-2478

    @pfurio
    pfurio committed Feb 2, 2023
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Commits on Feb 3, 2023

  1. analysis: improve query parser with 2 pop freqs, #TASK-2478

    @pfurio
    pfurio committed Feb 3, 2023
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Commits on Feb 6, 2023

  1. analysis: store paired PFs to be able to filter, #TASK-2478

    @pfurio
    pfurio committed Feb 6, 2023
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  2. analysis: remove useless CH pair combinations, #TASK-2478

    @pfurio
    pfurio committed Feb 6, 2023
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Commits on Mar 10, 2023

  1. analysis: fix queries with pop freq < 0.001

    @pfurio
    pfurio committed Mar 10, 2023
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Commits on Mar 20, 2023

  1. analysis: add collection suffix for RGA, #TASK-2478

    @pfurio
    pfurio committed Mar 20, 2023
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  2. analysis: check suffix is null, #TASK-2478

    @pfurio
    pfurio committed Mar 20, 2023
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Commits on Mar 21, 2023

  1. storage: Fix trio serialization in CompoundHeterozygous variant query.

    @j-coll
    j-coll committed Mar 21, 2023
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Commits on Mar 22, 2023

  1. analysis: remove limit to variant query, #TASK-2478

    @pfurio
    pfurio committed Mar 22, 2023
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Commits on Apr 5, 2023

  1. analysis: reduce number of parallel tasks, #TASK-2478

    @pfurio
    pfurio committed Apr 5, 2023
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  2. analysis: fix pop freq queries over CH variants, #TASK-2478

    @pfurio
    pfurio committed Apr 5, 2023
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