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I ran the following pipelines:
- cellranger multi workflow, workflows/ingestion/cellranger_multi (0.11.0)
- qc workflow, workflows/qc/qc (main_build: 7c40bbb)
The output of the cellranger multi .h5mu
:
MuData object with n_obs × n_vars = 1861136 × 32285
var: 'gene_symbol', 'feature_types', 'genome'
1 modality
rna: 1861136 x 32285
var: 'gene_symbol', 'feature_types', 'genome'
The output of the qc workflow .h5mu
:
MuData object with n_obs × n_vars = 1861136 × 32285
var: 'gene_symbol', 'feature_types', 'genome', 'mitochondrial', 'pct_dropout', 'num_nonzero_obs', 'obs_mean', 'total_counts'
1 modality
rna: 1861136 x 32285
obs: 'fraction_mitochondrial', 'num_nonzero_vars', 'total_counts', 'pct_mitochondrial', 'total_counts_mitochondrial', 'pct_of_counts_in_top_50_vars', 'pct_of_counts_in_top_100_vars', 'pct_of_counts_in_top_200_vars', 'pct_of_counts_in_top_500_vars'
var: 'gene_symbol', 'feature_types', 'genome', 'mitochondrial', 'pct_dropout', 'num_nonzero_obs', 'obs_mean', 'total_counts'
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