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cellranger_mkfastq: update cellranger from 6.0.2 to 7.0.1 #675

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merged 2 commits into from
Jan 26, 2024
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cellranger_mkfastq: update cellranger from 6.0.2 to 7.0.1 #675

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cellranger_mkfastq: update cellranger from 6.0.2 to 7.0.1
DriesSchaumont Jan 26, 2024
248e2fc
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DriesSchaumont Jan 26, 2024
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4 changes: 4 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -55,6 +55,10 @@

* Renamed `obsm_metrics` to `uns_metrics` for the `cellranger_mapping` workflow because the cellranger metrics are stored in `.uns` and not `.obsm` (PR #610).

## MAJOR CHANGES

* `mapping/cellranger_mkfastq`: update from cellranger `6.0.2` to `7.0.1` (PR #675)

## NEW FUNCTIONALITY

* `multisample` pipeline: This workflow now works when provided multimple unimodal files or multiple multimodal files, in addition to the previously supported single multimodal file (PR #606). The modalities are processed independently from each other:
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2 changes: 1 addition & 1 deletion src/demux/cellranger_mkfastq/config.vsh.yaml
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Expand Up @@ -48,7 +48,7 @@ functionality:
- path: /resources_test/cellranger_tiny_bcl
platforms:
- type: docker
image: ghcr.io/data-intuitive/cellranger:6.1
image: ghcr.io/data-intuitive/cellranger:7.0
setup:
- type: docker
run: apt-get update && apt-get upgrade -y
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