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Fix components #12

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Merged
merged 1 commit into from
Aug 26, 2025
Merged

Fix components #12

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5 changes: 1 addition & 4 deletions src/methods/scdesign3_nb/config.vsh.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -40,10 +40,7 @@ engines:
image: openproblems/base_r:1
setup:
- type: r
github:
- SONGDONGYUAN1994/scDesign3
url:
- https://cran.r-project.org/src/contrib/Archive/reticulate/reticulate_1.40.0.tar.gz
bioc: scDesign3

runners:
- type: executable
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7 changes: 1 addition & 6 deletions src/methods/scdesign3_poisson/config.vsh.yaml
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Expand Up @@ -39,13 +39,8 @@ engines:
- type: docker
image: openproblems/base_r:1
setup:
- type: apt
packages: [r-bioc-singlecellexperiment, git]
- type: r
url:
- https://cran.r-project.org/src/contrib/Archive/reticulate/reticulate_1.40.0.tar.gz
github:
- SONGDONGYUAN1994/scDesign3
bioc: [scDesign3, SingleCellExperiment]

runners:
- type: executable
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2 changes: 0 additions & 2 deletions src/metrics/ks_statistic_sc_features/config.vsh.yaml
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Expand Up @@ -66,8 +66,6 @@ engines:
- xuranw/MuSiC
- YingMa0107/CARD
- SydneyBioX/scFeatures
url:
- https://cran.r-project.org/src/contrib/Archive/reticulate/reticulate_1.40.0.tar.gz

runners:
- type: executable
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2 changes: 0 additions & 2 deletions src/process_datasets/sc_features/config.vsh.yaml
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Expand Up @@ -35,8 +35,6 @@ engines:
- type: r
github:
- SydneyBioX/scFeatures
url:
- https://cran.r-project.org/src/contrib/Archive/reticulate/reticulate_1.40.0.tar.gz

runners:
- type: executable
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