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    24 repositories

    • APPRAISE

      Public
      Rank binders by structure modeling
      Python
      •
      Apache License 2.0
      •8•15•0•0•Updated Apr 19, 2024Apr 19, 2024

    • useqfish_probedesign

      Public
      Python
      •2•2•2•1•Updated Apr 14, 2024Apr 14, 2024

    • AAV_sequence_similarity

      Public
      Compare AAV sequences by chemical similarity
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Dec 6, 2023Dec 6, 2023

    • SCN_VIP_light_responses

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Aug 24, 2023Aug 24, 2023

    • CAP-Mac

      Public
      All data analysis and source files associated the with AAV.CAP-Mac publication (Nature Nanotechnology)
      Jupyter Notebook
      •0•0•0•0•Updated Jun 14, 2023Jun 14, 2023

    • multisite-libraries

      Public
      Code to analyze substitution libraries generated between VR IV, VR V, and VR VIII.
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 8, 2023May 8, 2023

    • Image_Segmentation

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated May 8, 2023May 8, 2023

    • SCN-VIP-estrous-cycle

      Public
      Anat Kahan, Jan 2023
      MATLAB
      •0•0•0•0•Updated Mar 26, 2023Mar 26, 2023

    • in-vitro-transduction-assay

      Public
      The purpose of this repository is to quantify the transduction of AAV serotypes in vitro using image segmentation.
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 4, 2023Mar 4, 2023

    • useqfish_analysis

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•2•5•0•Updated Dec 3, 2022Dec 3, 2022

    • useqfish_imaging

      Public
      Python
      •0•1•0•0•Updated Nov 23, 2022Nov 23, 2022

    • BMGF-Caltech

      Public
      This repository contains a script for processing data about potential contraceptive targets from Open Targets and CITDBase and retrieving RNA and protein expression information from the Human Protein Atlas
      Python
      •0•0•0•0•Updated May 7, 2022May 7, 2022

    • BMGF-Caltech_Imaris-Analysis

      Public
      Python
      •0•0•0•0•Updated May 3, 2022May 3, 2022

    • Light-guided-sectioning-v2

      Public
      Cell Reports 2021
      MATLAB
      •0•0•0•0•Updated Mar 23, 2022Mar 23, 2022

    • aavomics

      Public
      Python
      •0•2•0•0•Updated Nov 16, 2021Nov 16, 2021

    • HCRprobe

      Public
      Matlab codes for designing HCR probes
      MATLAB
      •1•4•1•0•Updated Oct 20, 2021Oct 20, 2021

    • pepars

      Public
      Python
      •
      Other
      •0•2•2•0•Updated Sep 29, 2021Sep 29, 2021

    • striatum2P

      Public
      Code and sample data used to generate figures in Badimon et al., 2020
      MATLAB
      •
      Other
      •0•4•0•0•Updated Aug 13, 2020Aug 13, 2020

    • protfarm

      Public
      Python
      •
      Other
      •0•1•0•0•Updated Feb 2, 2020Feb 2, 2020

    • mCREATE

      Public
      Jupyter Notebook
      •
      Other
      •7•13•0•0•Updated Jan 10, 2020Jan 10, 2020

    • dLight1

      Public
      MATLAB
      •
      Other
      •1•3•0•0•Updated Sep 19, 2019Sep 19, 2019

    • protfarm-gui

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Apr 23, 2019Apr 23, 2019

    • Jellyfish

      Public
      Python
      •2•1•0•0•Updated Aug 3, 2017Aug 3, 2017

    • ChanNN17

      Public
      Ken Chan et al., Nature Neuroscience, 2017
      Jupyter Notebook
      •0•1•0•0•Updated Jun 28, 2017Jun 28, 2017