Repositories list

• neurotk

  Public
  Neuropathology toolkit, utilizing the Digital Slide Archive.

  Python

  •0•0•0•0•Updated Jan 30, 2025Jan 30, 2025

• dsa-helpers

  Public
  Digital Slide Archive Python utility library.

  Python

  •

  MIT License

  •0•0•0•0•Updated Jan 29, 2025Jan 29, 2025

• DSA-Tissue-Reg

  Public
  This will allow a user to pull image sets from the DSA, register serial sections, and also allow annotation documents to be registered / translated from one image to another

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Dec 12, 2024Dec 12, 2024

• bdsa-readthedocs

  Public
  Python

  •0•0•0•0•Updated Dec 10, 2024Dec 10, 2024

• yolo-braak-stage

  Public
  Workflow for training YOLO models for detection of NFTs to use imaging features in Braak stage predictions.

  Jupyter Notebook

  •0•0•0•0•Updated Dec 3, 2024Dec 3, 2024

• BrainDigitalSlideArchive

  Public
  This contains documentation / read the docs for the BDSA Project

  0•0•0•0•Updated Nov 21, 2024Nov 21, 2024

• BDSA-Schema-Wrangler

  Public archive
  This is a dash app that will help to organize imaging metadata for the BDSA App

  HTML

  •0•1•1•0•Updated Oct 21, 2024Oct 21, 2024

• slicer-cli-example

  Public
  An example for creating a DSA slicer-cli.

  Python

  •0•0•0•0•Updated Oct 14, 2024Oct 14, 2024

• BrainSec-py

  Public
  Automated Grey and White Matter Segmentation in Digitized Aβ Human Brain Tissue WSI - Python Port

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •4•0•0•0•Updated Sep 19, 2024Sep 19, 2024

• bdsarepochat

  Public
  Chatbot assistant enabling GitHub repository interaction using LLMs with Retrieval Augmented Generation

  Python

  •

  Apache License 2.0

  •51•0•0•0•Updated Aug 28, 2024Aug 28, 2024

• ADRC-np-survey-2023

  Public
  Jupyter Notebook

  •0•0•0•0•Updated May 2, 2023May 2, 2023