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    6 repositories

    • json-schema

      Public
      JSON Schema validator for java, based on the org.json API
      Java
      •
      Apache License 2.0
      •282•0•0•0•Updated Nov 4, 2022Nov 4, 2022

    • lumpy-sv

      Public
      lumpy: a general probabilistic framework for structural variant discovery
      C
      •
      MIT License
      •119•0•0•0•Updated Jun 7, 2022Jun 7, 2022

    • DEGreport

      Public
      Create a cromphensive report of DEG list coming from any analysis of RNAseq data
      R
      •
      MIT License
      •16•0•0•0•Updated May 24, 2022May 24, 2022

    • RFcaller

      Public
      A pipeline that uses read-level features and extra trees/random forest algorithms for accurate and fast detection of somatic mutations in next generation sequencing data
      Python
      •3•0•0•0•Updated May 2, 2022May 2, 2022

    • VariantCallingFJD

      Public
      Perl
      •6•0•0•0•Updated Apr 20, 2022Apr 20, 2022

    • megalodon

      Public
      Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transriptome.
      Python
      •
      Other
      •30•0•0•0•Updated Feb 25, 2021Feb 25, 2021