Bio-Ontology Research Group

All

205 repositories

mowl
Public
mOWL: Machine Learning library with Ontologies
machine-learning ontologies neural-symbolic neuro-symbolic neurosymbolic
Python
•
BSD 3-Clause "New" or "Revised" License
•4•56•9•2•Updated Nov 6, 2024Nov 6, 2024
Genomic_context
Public
Protein function prediction (GO classes) using genomic context
Python
•0•0•0•0•Updated Nov 4, 2024Nov 4, 2024
DELE
Public
Python
•
MIT License
•0•0•0•0•Updated Nov 3, 2024Nov 3, 2024
PU-GO
Public
Predicting protein functions using positive-unlabeled ranking with ontology-based priors
protein-function-prediction positive-unlabeled-learning
Python
•2•3•1•0•Updated Oct 26, 2024Oct 26, 2024
catE
Public
Lattice-preserving ALC ontology embeddings
category-theory neuro-symbolic-ai ontology-embedding approximate-reasoning
Python
•2•1•0•0•Updated Oct 24, 2024Oct 24, 2024
deepgometa
Public
Python
•
BSD 3-Clause "New" or "Revised" License
•0•6•0•0•Updated Oct 17, 2024Oct 17, 2024
Causal-relations-between-diseases
Public
0•0•0•0•Updated Oct 2, 2024Oct 2, 2024
jcel
Public
Reasoner for the description logic EL+.
Java
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Apache License 2.0
•6•1•0•0•Updated Sep 28, 2024Sep 28, 2024
hguploader
Public
Common Workflow Language
•0•0•0•0•Updated Sep 20, 2024Sep 20, 2024
FunEq
Public
Lean
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Creative Commons Zero v1.0 Universal
•0•1•0•0•Updated Sep 17, 2024Sep 17, 2024
deepgo2
Public
Python
•
BSD 3-Clause "New" or "Revised" License
•3•31•5•0•Updated Sep 11, 2024Sep 11, 2024
reasoning-augmented-generation
Public
Reasoning Augmented Generation - BH 2024
Python
•0•0•0•0•Updated Aug 30, 2024Aug 30, 2024
STARVar
Public
STARVar:Symptom based Tool for Automatic Ranking of Variants using evidence from literature and genomes
text-mining genomics-data variant-priorisation variant-ranking
Python
•1•5•0•1•Updated Jul 30, 2024Jul 30, 2024
gda_analysis
Public
Python
•1•0•0•0•Updated Jul 24, 2024Jul 24, 2024
FEAS
Public
Python
•0•0•0•0•Updated Jul 9, 2024Jul 9, 2024
predCAN
Public
Ontology-based prediction of cancer driver genes
machine-learning driver-genes ontology embeddings
Python
•
BSD 2-Clause "Simplified" License
•4•5•0•2•Updated Jun 17, 2024Jun 17, 2024
pathophenodb
Public
Web application and additional content for PathoPhenoDB
Python
•0•7•2•5•Updated Jun 9, 2024Jun 9, 2024
pangenome
Public
Pangenome workflow in CWL
Common Workflow Language
•
BSD 3-Clause "New" or "Revised" License
•1•1•0•0•Updated Jun 5, 2024Jun 5, 2024
KSA001
Public
Telomere-2-Telomere Genome from Saudi Arabia
genome-assembly reference-genome personal-genomics
Common Workflow Language
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Other
•0•2•0•0•Updated Jun 2, 2024Jun 2, 2024
16SProcessing
Public
A Nextflow workflow to run vsearch for short read 16S data
Nextflow
•0•1•0•0•Updated May 29, 2024May 29, 2024
geometric_embeddings
Public
Python
•0•0•0•0•Updated May 15, 2024May 15, 2024
deepgoweb
Public
webapp gene-ontology
JavaScript
•1•1•0•12•Updated Apr 23, 2024Apr 23, 2024
deepgoplus
Public
DeepGO with GOPlus axioms
Python
•
BSD 3-Clause "New" or "Revised" License
•41•89•17•2•Updated Apr 23, 2024Apr 23, 2024
EmbedPVP
Public
EmbedPVP: Embedding-based Phenotype Variant Predictor
bioinformatics variant-analysis neuro-symbolic biomedical-ontologies prioritization-algorithm genomic-variants knowledge-enhanced-learning
Python
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GNU General Public License v3.0
•0•3•0•0•Updated Apr 4, 2024Apr 4, 2024
LLM_GenePrioritization
Public
Python
•0•0•0•0•Updated Mar 28, 2024Mar 28, 2024
semrec2023
Public
Python
•0•0•0•0•Updated Mar 22, 2024Mar 22, 2024
Metagenomic-DeepFRI
Public
Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
Python
•
BSD 3-Clause "New" or "Revised" License
•6•0•0•0•Updated Mar 13, 2024Mar 13, 2024
foldcomp
Public
Compressing protein structures effectively with torsion angles
C++
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GNU General Public License v3.0
•14•0•0•0•Updated Feb 6, 2024Feb 6, 2024
t2t
Public
Python
•
BSD 3-Clause "New" or "Revised" License
•1•0•0•0•Updated Jan 22, 2024Jan 22, 2024
blah8
Public
0•0•0•0•Updated Jan 11, 2024Jan 11, 2024