Repositories list

• MONAIfbs

  Public
  Python

  •

  Apache License 2.0

  •4•23•3•1•Updated Nov 3, 2023Nov 3, 2023

• FetalBrainParcellation

  Public archive
  A tool for the automatic segmentation of fetal brain 3D T2-weighted MRI

  deep-learningpytorchmedical-imaging+ 2segmentationimage-segmentation

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•5•0•0•Updated Jun 22, 2023Jun 22, 2023

• NiftyMIC

  Public
  NiftyMIC is a research-focused toolkit for motion correction and volumetric image reconstruction of 2D ultra-fast MRI.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •32•136•15•0•Updated Feb 15, 2022Feb 15, 2022

• GIFT-Grab

  Public
  An open-source C++ and Python API for acquiring, processing and encoding video streams in real time. Supports several frame-grabber cards, standard-compliant network streams and video files. Python API is compatible with NumPy and SciPy.

  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •14•42•23•5•Updated Feb 22, 2021Feb 22, 2021

• NSoL

  Public
  The Numerical Solver Library (NSoL) is a research-focused toolkit for denoising and deconvolution applications using ADMM and Primal-Dual methods.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •2•8•0•0•Updated Jan 31, 2021Jan 31, 2021

• FetalBrainSegmentation_MONAI

  Public
  Tool for fetal brain segmentation in MRI

  Jupyter Notebook

  •

  Apache License 2.0

  •0•1•5•0•Updated Nov 27, 2020Nov 27, 2020

• puma

  Public
  Python Unified Multi-tasking API (PUMA)

  Python

  •

  Apache License 2.0

  •0•0•13•2•Updated Jul 29, 2020Jul 29, 2020

• ITK_NiftyMIC

  Public
  This repository contains numerous additional filters and functions to extend the standard (Wrap)ITK Release 4.13. It is a necessary requirement in order to use NiftyMIC and related toolkits.

  C++

  •

  Apache License 2.0

  •2•3•1•0•Updated Dec 7, 2019Dec 7, 2019

• PySiTK

  Public
  PySiTK is a research-focused toolkit containing a collection of Python helper functions. In particular it facilitates the interaction between SimpleITK and ITK.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •3•7•0•0•Updated Aug 11, 2019Aug 11, 2019

• SimpleReg

  Public
  SimpleReg is a research-focused toolkit that provides tools helpful for (medical) image registration and processing.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •3•21•1•0•Updated Jul 26, 2019Jul 26, 2019

• SPOT-A-NeonatalRabbit

  Public
  Segmentation Propagation on Target (...as a Neonatal Rabbit)

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •3•2•0•0•Updated Jul 12, 2019Jul 12, 2019

• MRImultiAtlasForNeonatalRabbitBrain

  Public
  Code for the benchmarking and validation of the Neonatal Rabbit brain Multi-Atlas

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •2•1•0•0•Updated Apr 20, 2019Apr 20, 2019

• RabbitBrainAnalysis

  Public
  Full pipeline for processing, segmentation and data analysis of a rabbit brain scan. See also https://www.sciencedirect.com/science/article/pii/S1053811918305366?via%3Dihub

  Python

  •2•0•0•0•Updated Apr 20, 2019Apr 20, 2019

• DyBaORF

  Public
  Dymanically Balanced Online Random Forest

  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •4•5•0•1•Updated Apr 19, 2019Apr 19, 2019

• fetal_brain_seg

  Public
  A toolkit for fetal brain localization and segmentation using deep learning

  Python

  •8•19•2•1•Updated Apr 19, 2019Apr 19, 2019

• Xono2L

  Public
  LabVIEW-compatible, extensible C++ API for capturing live ultrasound streams

  windowsstreamingreal-time+ 10videolabviewmedicalmedical-imagingimagingultrasoundreal-time-video-streaming+ 3

  C++

  •

  Apache License 2.0

  •1•3•10•1•Updated Apr 15, 2019Apr 15, 2019

• lie_exponential

  Public archive
  Numerical computation of the Lie exponential for stationary velocity fields.

  BSD 3-Clause "New" or "Revised" License

  •0•1•0•0•Updated Jan 29, 2019Jan 29, 2019

• SlicSeg

  Public
  An API and GUI application for semi-automated interactive segmentation of medical images.

  MATLAB

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  BSD 3-Clause "New" or "Revised" License

  •8•18•0•1•Updated Jan 15, 2019Jan 15, 2019

• vessel-tools

  Public
  Scripts and utility programs for extracting and processing vasculature

  C++

  •

  Other

  •3•1•0•0•Updated Aug 21, 2018Aug 21, 2018

• endocal

  Public
  A cross-platform, compact GUI application for the optical distortion calibration of fluid-immersed endoscopes

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•4•0•Updated Apr 19, 2018Apr 19, 2018

• GiftCloudUploader

  Public
  A Java Web Start application for anonymising and uploading DICOM data to a GIFT-Cloud or XNAT server

  data-sciencedatabasemedical-imaging+ 5medical-image-computingmedical-image-processingxnatgift-cloudgift-surg

  Java

  •

  Other

  •5•4•1•0•Updated Jan 31, 2018Jan 31, 2018

• VolumetricReconstructionFromPrintedFilms

  Public
  A research-focused toolkit developed within the GIFT-Surg project to reconstruct a volumetric representation from printed brain MR films.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•4•0•0•Updated Dec 18, 2017Dec 18, 2017

• NiftyMatch

  Public
  A library featuring GPU implementations of feature detection and matching algorithms.

  Cuda

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  BSD 3-Clause "New" or "Revised" License

  •1•3•1•0•Updated Oct 25, 2017Oct 25, 2017

• HighRes3DNet

  Public
  Apache License 2.0

  •3•24•0•0•Updated Jun 26, 2017Jun 26, 2017

• GiftCloudServerModule

  Public
  GIFT-Cloud's customised server module, used to customise a GIFT-Cloud server

  0•0•0•0•Updated Oct 3, 2016Oct 3, 2016

• GiftCloudServerBuilder

  Public
  GIFT-Cloud's customised fork of xnatbuilder, used to set up a GIFT-Cloud server

  JavaScript

  •1•4•0•0•Updated Oct 3, 2016Oct 3, 2016