Repositories list

• gene.iobio

  Public
  Gene.iobio vue

  Vue

  •

  MIT License

  •11•57•53•6•Updated Nov 11, 2024Nov 11, 2024

• iobio-gru-backend

  Public
  JavaScript

  •7•7•8•7•Updated Nov 9, 2024Nov 9, 2024

• calypso_pipeline

  Public
  Python

  •0•0•0•0•Updated Nov 8, 2024Nov 8, 2024

• iobio-charts

  Public
  JavaScript

  •1•0•25•2•Updated Nov 8, 2024Nov 8, 2024

• iobio.viz

  Public
  Visualization and charting JS library for streaming genomic data

  JavaScript

  •

  MIT License

  •3•19•2•0•Updated Nov 8, 2024Nov 8, 2024

• sv_pipeline_work

  Public
  A pipeline for annotating and QC filtering structural variants.

  Shell

  •0•1•0•0•Updated Nov 7, 2024Nov 7, 2024

• bam.iobio

  Public
  bam.iobio version 2.0

  JavaScript

  •

  Other

  •0•1•1•0•Updated Nov 5, 2024Nov 5, 2024

• sv.iobio

  Public
  structural variant visualization application

  Vue

  •0•0•19•0•Updated Nov 4, 2024Nov 4, 2024

• phenotype-extractor-vue

  Public
  A library for "select phenotypes" feature of clin.iobio

  JavaScript

  •0•1•1•5•Updated Oct 25, 2024Oct 25, 2024

• sv.iobio.be

  Public
  Backend services for testing & stand alone service to sv.iobio

  JavaScript

  •0•0•1•0•Updated Oct 24, 2024Oct 24, 2024

• pheno_matcher_be_rust

  Public
  Backend for the SimPheny project. Implemented in Rust for speed.

  Rust

  •0•0•0•0•Updated Oct 23, 2024Oct 23, 2024

• pheno-plus

  Public
  SMART on FHIR EMR project for retrieving Human Phenotype Ontology terms directly from medical record notes.

  Vue

  •0•0•3•0•Updated Oct 16, 2024Oct 16, 2024

• rnasplice.iobio

  Public
  Visualize short-read RNA splice events

  Vue

  •0•1•27•0•Updated Sep 26, 2024Sep 26, 2024

• oncogene

  Public
  Cancer tailored version of gene.iobio

  JavaScript

  •1•2•195•7•Updated Aug 9, 2024Aug 9, 2024

• SimPheny.iobio

  Public
  A web application for patient to patient phenotype matching.

  Vue

  •0•0•2•0•Updated Jul 17, 2024Jul 17, 2024

• gru-testing

  Public
  Python

  •0•0•0•0•Updated May 29, 2024May 29, 2024

• bam.iobio.io

  Public
  http://bam.iobio.io

  Vue

  •

  MIT License

  •19•47•65•21•Updated May 24, 2024May 24, 2024

• geneinfo.db

  Public
  This is project for rebuilding gene model by python

  Python

  •0•0•0•0•Updated May 2, 2024May 2, 2024

• timeline

  Public
  JavaScript

  •0•0•0•0•Updated Apr 25, 2024Apr 25, 2024

• pheno-plus-whitelist

  Public
  A background service that keeps a whitelist json for our pheno+ applicaiton up to date. This is a service for testing only.

  JavaScript

  •0•0•0•0•Updated Apr 25, 2024Apr 25, 2024

• patient_portal

  Public
  This is a patient portal project for Calypso and UDN

  Vue

  •0•0•2•0•Updated Apr 18, 2024Apr 18, 2024

• diff-express.viz

  Public
  An application for genetic differential expression dataset visualization.

  Vue

  •0•0•0•0•Updated Feb 13, 2024Feb 13, 2024

• bigwig-depther-rs

  Public
  Rust

  •0•0•0•0•Updated Feb 2, 2024Feb 2, 2024

• iobio-api-client

  Public
  JavaScript

  •0•0•0•3•Updated Oct 27, 2023Oct 27, 2023

• gru-aws-volume-manager

  Public
  Python

  •0•0•0•0•Updated Oct 25, 2023Oct 25, 2023

• clin.iobio

  Public
  Clin.iobio - Workflow and reporting for iobio variant analysis pipeline

  JavaScript

  •5•10•80•20•Updated Oct 21, 2023Oct 21, 2023

• gene.model.db

  Public archive
  Import refseq gene model (gff3) to sqlite3 db for gene.iobio and update with xref and canonical infor for transcripts

  Java

  •0•0•0•1•Updated Oct 5, 2023Oct 5, 2023

• gene_phenotype_associations

  Public
  Python scripts to load gene-to-phenotype db to supply gene to HPO terms (phenotypes) and gene to disease assocations.

  Python

  •1•0•0•1•Updated Oct 4, 2023Oct 4, 2023

• phenomatcher

  Public
  iobio version of phenomatcher tool

  Vue

  •0•0•0•0•Updated Sep 26, 2023Sep 26, 2023

• Phenotype-extractor

  Public
  Extract phenotypes/ conditions from clinical notes

  JavaScript

  •1•0•0•1•Updated Sep 25, 2023Sep 25, 2023