UCL Bioinformatics Group

All

46 repositories

Merizo
Public
Fast and accurate protein domain segmentation using Invariant Point Attention
Python
•
GNU General Public License v3.0
•5•26•1•0•Updated Oct 30, 2024Oct 30, 2024
merizo_search
Public
Fast protein domain structure embedding+search tool
Python
•
GNU General Public License v3.0
•3•8•1•0•Updated Oct 29, 2024Oct 29, 2024
ted-tools
Public
ML toolset for creating TED: The Encyclopedia of Domains
Python
•
MIT License
•1•7•0•0•Updated Aug 27, 2024Aug 27, 2024
psipred_react
Public
A react port of the psipred_webserver dynamic pages
JavaScript
•0•1•1•0•Updated Aug 22, 2024Aug 22, 2024
analytics_automated
Public
Middleware layer for exposing analytics and distributed computing jobs as web services
Python
•
Other
•4•0•0•0•Updated Aug 18, 2024Aug 18, 2024
p53_docking
Public
Project code for Chris Morris collab
Python
•0•0•0•0•Updated Jul 26, 2024Jul 26, 2024
s4pred
Public
A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
Python
•
GNU General Public License v3.0
•9•48•1•0•Updated Jul 24, 2024Jul 24, 2024
webserver_test_dbs
Public
A really tiny slice of the top of a late 2015 uniref90 release, plust BLAST db formatting
0•0•0•0•Updated Jun 12, 2024Jun 12, 2024
ansible_rocky
Public
new, united ansible repo for rocky machines
Shell
•0•0•0•0•Updated Jun 11, 2024Jun 11, 2024
DMPmetal
Public
repository for the DMPmetal metal binding site predictor
Python
•0•0•0•0•Updated Apr 18, 2024Apr 18, 2024
hspred
Public
Protein-protein interaction hotspot predictor
proteins protein-structure hotspot-prediciton
Perl
•
Other
•0•1•0•0•Updated Apr 17, 2024Apr 17, 2024
web_server_scripts
Public
Web server helper scripts
Python
•0•0•0•0•Updated Apr 17, 2024Apr 17, 2024
mempack
Public
Membrane alpha helix packing and orientation predicrtor
helix-packing membrane-proteins
Perl
•
Other
•1•1•0•0•Updated Apr 17, 2024Apr 17, 2024
blast_cache
Public
PSIBLAST and BLAST cache
devops blast blast-cache
Python
•
GNU General Public License v3.0
•0•0•3•3•Updated Apr 15, 2024Apr 15, 2024
biod3
Public
Protein annotation web graphics lib
d3 protein-annotation
JavaScript
•0•0•0•0•Updated Feb 22, 2024Feb 22, 2024
MemEmbed
Public
Membrane protein orientation using knowledge-bases potentials
membrane-protiens membrane-orientation
C++
•
Other
•0•1•0•0•Updated Feb 13, 2024Feb 13, 2024
ansible_production_config
Public archive
Production version of our ansible config, which also loses all the extraneous waffle
Perl
•0•0•1•1•Updated Feb 12, 2024Feb 12, 2024
ansible_config
Public archive
PSIPRED server architecture ansible config and playbooks
devops web-server
Shell
•0•0•0•0•Updated Feb 12, 2024Feb 12, 2024
FFPred
Public
Protein function by GO term prediction using SVMs
proteins function-predicition
Perl
•
MIT License
•0•2•0•0•Updated Aug 1, 2023Aug 1, 2023
DMPfold2
Public
Fast and accurate protein structure prediction
deep-learning end-to-end multiple-sequence-alignment protein-structure-prediction
Python
•
GNU General Public License v3.0
•12•49•0•1•Updated Jul 25, 2023Jul 25, 2023
protein-vae
Public
Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies
protein-structure autoencoder topologies variational-autoencoder metal-binding-prediction protein-sequences
Python
•
MIT License
•17•80•0•0•Updated Jul 13, 2023Jul 13, 2023
MemSatSVM
Public
Membrane helix prediction with SVMs
membrane-proteins membrane-helix-predicion membrane-topology
Perl
•
Other
•2•1•0•0•Updated May 23, 2023May 23, 2023
psipred_javascript
Public archive
All the javascript to run the new website (sans biod3)
JavaScript
•
GNU General Public License v3.0
•0•0•0•4•Updated Jan 20, 2023Jan 20, 2023
psipred_website
Public archive
The is the new psipred website.
website
JavaScript
•
GNU General Public License v3.0
•0•2•0•2•Updated Jan 20, 2023Jan 20, 2023
cgdms
Public
Differentiable molecular simulation of proteins with a coarse-grained potential
automatic-differentiation protein force-field potential coarse-grained
Python
•
MIT License
•4•53•0•0•Updated Feb 21, 2022Feb 21, 2022
DMPfold
Public
De novo protein structure prediction using iteratively predicted structural constraints
deep-learning protein-structure resnet protein-sequence protein-structure-prediction
C
•
GNU General Public License v3.0
•16•55•0•0•Updated Jan 30, 2022Jan 30, 2022
domain_word2vec_scripts
Public
The scripts for the word2vec embedding paper
Python
•2•7•0•0•Updated Dec 16, 2021Dec 16, 2021
psipred_branding
Public
contains all our branding files, logos and info
0•0•0•0•Updated Nov 18, 2021Nov 18, 2021
psipred
Public
PSIPRED Protein Secondary Structure Predictor
proteins secondary-structure-prediction
Java
•
Other
•12•51•0•1•Updated Sep 17, 2021Sep 17, 2021
FFPredGAN
Public
Improving protein function prediction with synthetic feature samples created by generative adversarial networks
generative-adversarial-network data-augmentation synthetic-data protein-function-prediction
Python
•
GNU General Public License v3.0
•5•22•0•0•Updated Oct 6, 2020Oct 6, 2020