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Make the position coordinates consistent across data groups #77
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I'm not sure how to request a change on a file without a commit on github, but line 41 of README.md needs to change center = data["amr"]["xyz"][ind.values]
to center = data["amr"]["position"][ind.values]
. Other than that, I have no comments.
src/osyris/plot/direction.py
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dir_vecs = np.array([[0., 0.], [1., 0.], [0., 1.]]) | ||
dir_labs = {"x": "x", "y": "y"} | ||
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elif direction in ["top", "side"]: |
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direction.lower()
?
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I also applied it on "x", "y" and "z" strings.
zcenters = np.linspace(zmin + 0.5 * zspacing, zmax - 0.5 * zspacing, | ||
resolution['z']) | ||
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if thick: |
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Note that this change is somewhat unrelated.
When no dx was specified for the map, the extent in z depended on the size of the cells, and was necessarily symmetrical around the origin.
This meant that at the point of generating a mesh of sampling, the z coords were not always zero, and woudl lead to empty patches in the final map, because the sampling points did not agree with the selection of points done further up.
This is essentially a renaming of
xyz
in theamr
andsink
groups toposition
, which is consistent with thepart
group.In addition, the axes on map figures now have better names:
x
andy
ifdirection='z'
pos_u
,pos_v
if the orientation is not aligned with the grid axesFixes #73
Fixes #74