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update smoothxg to avoid uncovered edges #304

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Jun 17, 2023
Merged

update smoothxg to avoid uncovered edges #304

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2 changes: 1 addition & 1 deletion Dockerfile
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Expand Up @@ -67,7 +67,7 @@ RUN git clone --recursive https://github.com/ekg/seqwish \
RUN git clone --recursive https://github.com/pangenome/smoothxg \
&& cd smoothxg \
&& git pull \
&& git checkout d9adcfa21436c738f8f9ceea28643a81e606b757 \
&& git checkout 4ff4cf2487afca5629c55ec38c977106ff08001b \
&& git submodule update --init --recursive \
&& sed -i 's/-msse4.1/-march=sandybridge -Ofast/g' deps/spoa/CMakeLists.txt \
&& sed -i 's/-march=native/-march=sandybridge -Ofast/g' deps/spoa/CMakeLists.txt \
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