@pharmbio

pharmb.io

Pharmaceutical Bioinformatics research group at Uppsala University

Pinned repositories

  1. sciluigi

    A light-weight wrapper library around Spotify's Luigi workflow system to make writing scientific workflows more fluent, flexible and modular

    Python 220 43

  2. bioimg-sciluigi-casestudy

    An automated virtual machine setup, containing a use case for running workflows written in SciLuigi

    Python 2 1

  • The Static (Hugo) website for pharmb.io

    JavaScript 5 Updated Jul 5, 2018
  • Python 1 MIT Updated Jun 29, 2018
  • A light-weight wrapper library around Spotify's Luigi workflow system to make writing scientific workflows more fluent, flexible and modular

    Python 220 43 MIT Updated Jun 27, 2018
  • Jupyter Notebook Updated Jun 27, 2018
  • PTP Project Source Code Repository

    TeX 1 Updated Jun 21, 2018
  • Start-to-end LC-MS-analysis workflow definition on Pachyderm

    Shell 3 Updated Jun 19, 2018
  • Python MIT Updated Jun 18, 2018
  • Aggregated Conformal Prediction on non-disclosed dataset

    CSS MIT Updated Jun 13, 2018
  • Repository on services hosted by pharmb.io

    Updated Apr 23, 2018
  • Code related to the conformal prediction log D project

    CSS 1 1 Updated Apr 11, 2018
  • Scalable and reproducible metabolomics preprocessing workflow powered by Pachyderm

    1 1 Apache-2.0 Updated Feb 9, 2018
  • A GPU / device extension framework for Kubernetes

    Go 14 MIT Updated Feb 5, 2018
  • Chart repository for Helm

    Smarty 1 Updated Jan 3, 2018
  • Namnlapp till kontoret på BMC

    2 Updated Dec 5, 2017
  • A simple web server enabling resolving RDF URIs based on data in a RDF HDT file, or a SPARQL endpoint

    Go 2 MIT Updated Dec 4, 2017
  • lychi

    Forked from ncats/lychi

    Layered Chemical Identifier

    Java 2 Apache-2.0 Updated Nov 9, 2017
  • Run Blazegraph in Docker

    9 Updated Sep 1, 2017
  • Docker image for the Blazegraph triple store

    Shell MIT Updated Aug 31, 2017
  • Molecular standardisation tool

    Jupyter Notebook 13 Updated Apr 25, 2017
  • An automated virtual machine setup, containing a use case for running workflows written in SciLuigi

    Python 2 1 Updated Feb 8, 2017
  • Portal for multi-drug resistant bacteria

    Perl Updated Jan 14, 2017
  • It's time to use Go in notebooks.

    Go 105 MIT Updated Oct 3, 2016
  • RDFIO

    Forked from rdfio/RDFIO

    RDF triples import, export and PHP SPARQL endpoint for Semantic MediaWiki

    PHP 5 Updated Jun 3, 2016
  • Python 1 Updated May 12, 2016
  • See this link for the components used: http://github.com/pharmbio/mm_components

    Python 1 Updated Apr 20, 2016
  • 4store

    Forked from 4store/4store

    4store

    C 55 GPL-3.0 Updated Apr 20, 2016
  • ISA-TAB to RDF conversion for ToxBank

    Java 3 Updated Aug 20, 2015