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We're having trouble reproducing your issue. What OS and Arduino version are you using, and what program are you trying to compile?
Note that those warnings are coming from some support files that were originally needed because the Arduino toolchain didn't support the ATmega328PB, but they are now unnecessary and we are looking at removing them, so this might become irrelevant soon anyway.
We just released version 5.0.0 of the A-Star boards package. If you update to the latest version using the Arduino IDE's Board Manager, these warnings should go away because the file generating them has been removed.
Seems like an easy fix
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