More resources

Protege and owl tutorials

• http://wiki.geneontology.org/index.php/Category:Editor_Guide_2018

• 2020-04-09 Nico protege tutorial

• Classic OWL tutorials

• http://owl.cs.manchester.ac.uk/publications/talks-and-tutorials/protg-owl-tutorial/

• http://owl.cs.manchester.ac.uk/publications/talks-and-tutorials/fhkbtutorial/

FYPO README

See the [editors readme[(https://github.com/pombase/fypo/blob/master/src/ontology/README-editors.md) might need a significant update.

• FYPO synonyms pipeline: If you're adding a lot of synonyms, whether to new or existing terms, you really will want to use this. The description is fine.

uPheno Patterns

• FYPO gdoc https://docs.google.com/document/d/1ODNkheNPWPgNeiYdQ1gRZVW3QxWdtpNMC9X9p52szpE/edit

  • note: change exists_during to RO_0002490 existence overlaps

• Patterns

• https://github.com/obophenotype/upheno/issues

• https://github.com/obophenotype/upheno/tree/master/src/patterns (esp. dosdp-dev subdirectory)

• Also see the upheno.txt document (there is a collection of patterns in uPHENO)

• Example pattern PATO_0001162 and (GOREL_0000001 some GO_0072690) and (inheres_in some GO_0034613) and (towards some GO_0031902) and (qualifier some PATO_0000460)