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Removed HPX and Boost dependencies and added mesh partitioning and MPI and Multithreading parallelism #20

Merged
merged 64 commits into from
Jun 3, 2024
Merged

Removed HPX and Boost dependencies and added mesh partitioning and MPI and Multithreading parallelism #20

merged 64 commits into from
Jun 3, 2024

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prashjha
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@prashjha prashjha commented Jun 3, 2024

Enhancements

  • Removes HPX dependency
  • Integrated with Taskflow for asynchronous multithreading parallelism
  • Uses Metis for partitioning of mesh (especially, partitioning considering nonlocal interaction in peridynamics)
  • Basic support for MPI parallelism which will be expanded to run both peridynamics and peridem simulations in parallel using MPI
  • Improved documentation
  • Added tests for graph partitioning, taskflow parallel for-loop, and MPI

@prashjha
moving from hpx to taskflow
f4512dc
@prashjha
removed hpx; now checking compile issues
f5e42ce
@prashjha
code builds and tests seem to pass; need to profile multithread compu…
867732a 
…te efficiency using taskflow
@prashjha
need to fix circle ci
2550511
@prashjha
readd tasflow
c58935b
@prashjha
checkout taskflow v3.5.0
75d64f5
@prashjha
circle change to handle submodules
a96b22e
@prashjha
circle change to handle submodules
1141be4
@prashjha
circle change to handle submodules
e5ef271
@prashjha
circle change to handle submodules
e51f57a
@prashjha
circle change to handle submodules
8308698
@prashjha
circle change to handle submodules
ff4ba87
@prashjha
circle change to handle submodules
d86fcad
@prashjha
circle change to handle submodules
4fc63b5
@prashjha
removing dependency on tbb
49b36ce
@prashjha
prevent csv reader from depending on threads
7a36ec7
@prashjha
prevent csv reader from depending on threads
d78840c
@prashjha
taskflow needs tbb library
28dc76a
@prashjha
update cmake file
9432016
@prashjha
add C as language for code to compile on mac; modify vtk call for it …
571a68a 
…to work with vtk 9 on mac
@prashjha
moving to vtk 9; fixed run scripts to capture script output in mac
c60f682
@prashjha
update docker for circle-ci tests; check for matrix correctly; add do…
c53059b 
…cker to test peridem
@prashjha
checking why TestFE fails in docker
ef617b5
@prashjha
Test compile with docker image
6f0a11e
@prashjha
update circleci config and enable deploy and codecoverage only for ma…
4ad5d10 
…in branch
@prashjha
convert error into warning for max_node_dist check in PeriDEM() model
0060160
@prashjha
WIP: code does not compiles. Fixed taskflow integration
0273dd0
@prashjha
specify taskflow submodule branch
0caf872
@prashjha
specify taskflow submodule branch
5a0dbf8
@prashjha
WIP: remove taskflow
53c47ed
@prashjha
Added flags to run MPI tests in Circleci
9a96e4b
@prashjha
Added flags to run MPI tests in Circleci
905e130
@prashjha
Added flags to run MPI tests in Circleci
d87590b
@prashjha
Small fix in circle-ci config in setting env variable
26d3c97
@prashjha
do not build mpi tests in circle-ci testing
ba76ac1
@prashjha
Implemented MPI testing for nonlocal calculations
e34327e
@prashjha
Implemented MPI testing for nonlocal calculations
d513093
@prashjha
Fixed problem including mpi.h
5e996fa
@prashjha
Add util::mpi::initMpi() to all executibles
a7fd8b6
@prashjha
disable mpi tests inside docker
285df94
@prashjha
add flag to force build mpi tests inside docker
4c5a2b3
@prashjha
add flag to force build mpi tests inside docker
ccaeb08
@prashjha
select user in docker container and enable mpi tests in circle-ci docker
349e00b
@prashjha
minor updates
84e59ad
@prashjha
fix number of threads from input argument if provided, set threads in…
99b5024 
… taskflow from util::parallel::getNThreads(), change syntax in all examples and tests to specify number of threads
@prashjha
1. updated README.md file, 2. addressed doxygen warning on header fil…
b0982b7 
…es for documentation, 3. updated docker files for package in .circleci/docker
@prashjha
update tutorial folder
f5b38dd
@prashjha
update versions of nanoflann and csv and keep only files we need from…
8cb8686 
… external libraries
@prashjha
cleaned external directory and added README.md in external directory …
73bd152 
…to include information about external libraries included in the project
@prashjha
update circle-ci config
975e628
@prashjha
update circle-ci config. Ready to merge to main
482609f
@prashjha
update circle-ci config. Ready to merge to main
144c2e3
@prashjha
update circle-ci config. Ready to merge to main
194c4aa
@prashjha
update circle-ci config. Ready to merge to main
09a4a66
@prashjha prashjha merged commit 30d1c16 into main Jun 3, 2024
3 checks passed
@prashjha prashjha deleted the remove_hpx branch June 3, 2024 22:21
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build cmake code documentaiton
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Improve documentation
Status: Done
Increase code coverage
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Minimize dependencies and simplify code build
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