@princelab

princelab

The Prince Laboratory: Mass spectrometry omics (proteomics, lipidomics, and metabolomics)

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Ruby 4 3

savgol

Implements Savitzky-Golay filters in ruby (and eventually in NMatrix)

Updated

Ruby 2 1

lipid_classifier

Lipid classification tool

Updated

Ruby 0 0

mspire-envelope_extractor

Extract isotope envelopes for protein turnover studies

Updated

Ruby 1 0

mspire-centroider

centroid profile spectra

Updated

Ruby 0 0

ruby-emass

A pure ruby implementation of the Perttu Haimi's implementation of the Rockwood & Haimi 2006 JASMS "Efficient Calculation of Accurate Masses of Isotopic Peaks" method.

Updated

Ruby 1 0

mspire-lipid

for working with mass spectrometry lipidomics data (right now shotgun style data)

Updated

Ruby 0 0

mspire-molecular_formula

mspire library to handle molecular formulas (including an optional charge state), complete with relevant chemical properties such as mass, m/z, and isotope distribution.

Updated

mspire

mass spectrometry proteomics in ruby

Updated

Ruby 0 0

mspire-mass

mspire library holding constants for mass lookup

Updated

Ruby 0 0

mspire-isotope

mspire library that can retrieve (from NIST) and yield element isotope information. Uses Neese biological ratios by default.

Updated

Ruby 1 0

massifquant

Kalman tracker for binless quantification of chromatographic features in mass spectrometry proteomics

Updated

Ruby 0 2

scripts

various scripts used by the princelab for data processing

Updated

emass

A copy of Perttu Haimi's implementation of the Rockwood & Haimi 2006 JASMS "Efficient Calculation of Accurate Masses of Isotopic Peaks" method. Includes some fixes which are tracked via version control.

Updated

Ruby 0 3

msplinter

fragments molecules

Updated

Ruby 0 0

mspire-obo

Tools for working with mass spectrometry related ontologies (obo files).

Updated

Ruby 4 2

rubabel

Ruby interface to the OpenBabel ruby bindings similar to pybel

Updated

Ruby 0 0

sqoosh

Simple Quantitation Of Omics Slightly Handy

Updated

Ruby 1 1

gnuplot-multiplot

enhances the gnuplot gem with multiplot capability

Updated

Ruby 0 0

peak_id_mapper

A pepxml and mzml feature mapping and extraction utility

Updated

Ruby 0 0

diadem

Dynamic Isotope calculations

Updated