Removed some printouts for debugging

proteomicsyates · Sep 13, 2016 · e21a218 · e21a218
1 parent 3bf14c2
commit e21a218
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diff --git a/ProtClusterQuant/src/main/java/edu/scripps/yates/pcq/ProteinClusterQuant.java b/ProtClusterQuant/src/main/java/edu/scripps/yates/pcq/ProteinClusterQuant.java
@@ -1124,9 +1124,6 @@ private Set<ProteinCluster> createClusters(Map<String, QuantifiedPeptideInterfac
 				// Map<String, protCluster> <- cluster (key = sequence)
 				clustersByPeptideSequence.put(sequence1, cluster);
 			}
-			if (sequence1.equals("AALCAVHVIR")) {
-				log.info(cluster.getPeptideSet());
-			}
 			// put peptide in cluster
 			cluster.addIndividualQuantifiedPeptide(peptide1);
 			// in case of having peptide alignments done

diff --git a/ProtClusterQuant/src/main/java/edu/scripps/yates/pcq/filter/PCQFilterByPSMCount.java b/ProtClusterQuant/src/main/java/edu/scripps/yates/pcq/filter/PCQFilterByPSMCount.java
@@ -22,9 +22,6 @@ protected boolean filter(PCQProteinNode proteinNode) {
 	@Override
 	protected boolean filter(PCQPeptideNode peptideNode) {
 		final int psmCount = peptideNode.getQuantifiedPSMs().size();
-		if (peptideNode.getSequence().contains("AALCAVHVIR")) {
-			log.info(peptideNode);
-		}
 		if (psmCount >= minPSMCountPerNode) {
 			return true;
 		}