add datalad run-procedure interface for un/repack-studyspec scripts

pvavra · Dec 6, 2019 · 9415a89 · bpoldrack · Dec 9, 2019 · pvavra
1 parent eec6114
commit 9415a89
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diff --git a/.datalad/config b/.datalad/config
@@ -1,2 +1,13 @@
 [datalad "dataset"]
 	id = badd1ad0-1819-11ea-a1e8-a0369f7c647e
+
+[datalad "locations"]
+	dataset-procedures = procedures
+
+[datalad "procedures.unpack-studyspec"]
+	call-format = "bash {script} {args}"
+	help = "helper to convert studyspec.json into valid-json format"
+
+[datalad "procedures.repack-studyspec"]
+	call-format = "bash {script} {args}"
+	help = "helper to convert valid-json into studyspec.json format"
diff --git a/repack_studyspec.py → helpers/repack_studyspec.py b/repack_studyspec.py → helpers/repack_studyspec.py
diff --git a/unpack_studyspec.py → helpers/unpack_studyspec.py b/unpack_studyspec.py → helpers/unpack_studyspec.py
diff --git a/procedures/repack-studyspec.sh b/procedures/repack-studyspec.sh
@@ -0,0 +1,12 @@
+#!/usr/bin/env bash
+# simple wrapper around helpers/repack-studyspec.py which will call datalad run
+
+set -e -u
+set -x
+
+if [ "$#" -gt 1 ]
+then
+    datalad run --explicit --input "$1" --output "$2" python helplers/repack-studyspec.py "$1" "$2"
+else
+    datalad run --explicit --input "$1" --output "$1" python helplers/repack-studyspec.py "$1" "$1"
+fi
diff --git a/procedures/unpack-studyspec.sh b/procedures/unpack-studyspec.sh
@@ -0,0 +1,12 @@
+#!/usr/bin/env bash
+# simple wrapper around helpers/unpack-studyspec.py which will call datalad run
+
+set -e -u
+set -x
+
+if [ "$#" -gt 1 ]
+then
+    datalad run --explicit --input "$1" --output "$2" python helplers/unpack-studyspec.py "$1" "$2"
+else
+    datalad run --explicit --input "$1" --output "$1" python helplers/unpack-studyspec.py "$1" "$1"
+fi