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[feat] add celltypist to annotate cell types (scrna.CellTypeAnnotation) #111

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pwwang opened this issue Jan 2, 2024 · 0 comments
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[feat] add celltypist to annotate cell types (scrna.CellTypeAnnotation) #111

pwwang opened this issue Jan 2, 2024 · 0 comments
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pwwang commented Jan 2, 2024

https://github.com/Teichlab/celltypist

@yuey11
@pwwang pwwang self-assigned this Jan 2, 2024
@pwwang pwwang added the feature New feature request label Jan 2, 2024
pwwang added a commit that referenced this issue Jan 17, 2024
@pwwang
scrna.CellTypeAnnotation: support celltypist (#111)
b7f5283
@pwwang pwwang mentioned this issue Jan 17, 2024
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pwwang added a commit that referenced this issue Jan 17, 2024
@pwwang
0.25.0 (#122)
94c3e33 
* deps: bump pipen to 0.13.1

* scrna.MarkersFinder: allow to cache FindAllMarkers results

* feat: add scrna.AnnData2Seurat and scrna.Seurat2AnnData

* scrna.CellTypeAnnotation: support celltypist (#111)

* test: add tests for celltypist of CellTypeAnnotation, AnnData2Seurat and Seurat2AnnData

* deps: bump pipen to 0.13.2

* scrna.SeuratSubClustering: add `envs_depth = 1` to replace `envs.cases` when new case assigned

* 0.25.0
@pwwang pwwang closed this as completed Jan 17, 2024
@pwwang pwwang mentioned this issue Jan 17, 2024
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