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0.13.0 #45

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pwwang merged 3 commits into master from dev

Feb 21, 2024

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pwwang commented Feb 21, 2024

deps: bump pipen to 0.14.1
deps: bump pipen-report to 0.18.2
deps: bump biopipen to 0.26.0
- fix(scrna.CellTypeAnnotation): keep factor meta data when input and output are RDS for celltypist
- deps: bump datar to 0.15.4 (support pandas 2.2)
- fix(utils.single_cell.R): fix immdata_from_expanded missing other data columns
- fix(tcr.Immunarch): fix mutaters not working when no subset is set
- fix(scrna.CellsDistribution): fix hm_devpars not working
- fix(scrna.CellsDistribution): fix multiple cells_by columns and speed up plotting
- choir(tcr.CloneResidency): mark singletons in Venn diagrams more clear
- fix(scrna.RadarPlots): fix the order of groups on radar plots
- choir(scrna.RadarPlots): transpose the count/percentage table to save to files
- fix(scrna.MarkersFinder): fix generating report json file when no significant genes found
- choir(scrna.MarkersFinder): Plot maximum 20 genes in dotplots
- choir(scrna.MarkersFinder): Do not convert dashes in case names to dots
- see more at https://github.com/pwwang/biopipen/releases/tag/0.26.0

pwwang added 3 commits

February 20, 2024 15:54


          deps: bump biopipen to 0.26.0

f56ffcb


          deps: bump pipen-report to 0.18.2

e3f90ee


          1.3.0

4e1705d

pwwang merged commit 8fb8482 into master

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