Fix deployment

.ci_support/release.py

@@ -52,10 +52,10 @@ def update_dependencies(setup_content, version_low_dict, version_high_dict):
         env_content = f.readlines()
 
     setup_content_new = update_dependencies(
-        setup_content=setup_content,
+        setup_content=setup_content[2:],
         version_low_dict=get_env_version(env_content=env_content),
-        version_high_dict=get_setup_version_and_pattern(setup_content=setup_content),
+        version_high_dict=get_setup_version_and_pattern(setup_content=setup_content[2:]),
     )
 
     with open('pyproject.toml', "w") as f:
-        f.writelines(setup_content_new)
+        f.writelines("".join(setup_content[:2]) + setup_content_new)

.github/workflows/deploy.yml

@@ -23,7 +23,7 @@ jobs:
       with:
         python-version: "3.11"
     - name: Install dependencies
-      run: python -m pip install --user --upgrade ase matplotlib numpy scipy setuptools wheel
+      run: python -m pip install --user --upgrade ase matplotlib numpy scipy setuptools versioneer wheel
     - name: Convert dependencies
       run: |
         cp .ci_support/environment-old.yml environment.yml

MANIFEST.in

@@ -1,3 +1 @@
-include versioneer.py
-include structuretoolkit/_version.py
-include LICENSE
+include LICENSE

pyproject.toml

@@ -1,5 +1,5 @@
 [build-system]
-requires = ["ase", "matplotlib", "numpy", "setuptools", "scipy"]
+requires = ["ase", "matplotlib", "numpy", "setuptools", "scipy", "versioneer[toml]==0.29"]
 build-backend = "setuptools.build_meta"
 
 [project]
@@ -56,8 +56,8 @@ phonopy = [
 ]
 pyxtal = ["pyxtal==0.6.1"]
 
-[tool.setuptools]
-packages = ["structuretoolkit"]
+[tool.setuptools.packages.find]
+include = ["structuretoolkit*"]
 
 [tool.setuptools.dynamic]
 version = {attr = "structuretoolkit.__version__"}

setup.py

@@ -1,3 +1,8 @@
 from setuptools import setup
 
-setup()
+import versioneer
+
+setup(
+    version=versioneer.get_version(),
+    cmdclass=versioneer.get_cmdclass(),
+)