modernize library

.github/dependabot.yml

@@ -0,0 +1,11 @@
+# See https://docs.github.com/en/code-security/supply-chain-security/keeping-your-dependencies-updated-automatically/keeping-your-actions-up-to-date-with-dependabot
+
+version: 2
+updates:
+
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    schedule:
+      interval: "daily"
+    labels:
+      - "Bot"

.github/workflows/deploy-docs.yml

@@ -0,0 +1,48 @@
+name: Documentation
+
+on:
+  pull_request:
+  push:
+    branches:
+      - main
+  release:
+    types:
+      - published
+
+jobs:
+  build-docs:
+    runs-on: ubuntu-latest
+
+    steps:
+    - name: checkout
+      uses: actions/checkout@v3
+      with:
+        fetch-depth: 0
+
+    - name: Setup Mamba
+      uses: mamba-org/provision-with-micromamba@v15
+      with:
+        environment-file: false
+
+    - name: Build environment
+      shell: bash -l {0}
+      run: |
+        micromamba create --name TEST python=3 --file requirements.txt --file requirements-dev.txt --channel conda-forge
+        micromamba activate TEST
+        python -m pip install -e . --no-deps --force-reinstall
+
+    - name: Build documentation
+      shell: bash -l {0}
+      run: |
+        set -e
+        micromamba activate TEST
+        pushd docs
+        make clean html linkcheck
+        popd
+
+    - name: Deploy
+      if: success() && github.event_name == 'release'
+      uses: peaceiris/actions-gh-pages@v3
+      with:
+        github_token: ${{ secrets.GITHUB_TOKEN }}
+        publish_dir: docs/build/html

.github/workflows/pypi.yml

@@ -0,0 +1,52 @@
+name: Publish to PyPI
+
+on:
+  pull_request:
+  push:
+    branches:
+      - main
+  release:
+    types:
+      - published
+
+jobs:
+  packages:
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v3
+
+    - name: Set up Python
+      uses: actions/setup-python@v4
+      with:
+        python-version: "3.x"
+
+    - name: Get tags
+      run: git fetch --depth=1 origin +refs/tags/*:refs/tags/*
+      shell: bash
+
+    - name: Install build tools
+      run: |
+        python -m pip install --upgrade pip wheel setuptools setuptools_scm build twine
+
+      shell: bash
+
+    - name: Build binary wheel
+      run: python -m build --sdist --wheel . --outdir dist
+
+    - name: CheckFiles
+      run: |
+        ls dist
+      shell: bash
+
+    - name: Test wheels
+      run: |
+        cd dist && python -m pip install *.whl
+        python -m twine check *
+      shell: bash
+
+    - name: Publish a Python distribution to PyPI
+      if: success() && github.event_name == 'release'
+      uses: pypa/gh-action-pypi-publish@release/v1
+      with:
+        user: __token__
+        password: ${{ secrets.PYPI_PASSWORD }}

.github/workflows/tests.yml

@@ -0,0 +1,45 @@
+name: Tests
+
+on:
+  pull_request:
+  push:
+    branches: [main]
+
+jobs:
+  run:
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        python-version: ["3.8", "3.9", "3.10", "3.11"]
+        os: [windows-latest, ubuntu-latest, macos-latest]
+      fail-fast: false
+
+    steps:
+    - uses: actions/checkout@v3
+      with:
+        fetch-depth: 0
+
+    - name: Setup Micromamba
+      uses: mamba-org/provision-with-micromamba@v15
+      with:
+        environment-file: false
+
+    - name: Python ${{ matrix.python-version }}
+      shell: bash -l {0}
+      run: >
+        micromamba create --name TEST python=${{ matrix.python-version }} --file requirements.txt --file requirements-dev.txt --channel conda-forge
+        && micromamba activate TEST
+        && python -m pip install -e . --no-deps --force-reinstall
+
+
+    - name: Tests
+      shell: bash -l {0}
+      run: >
+        micromamba activate TEST
+        && python -m pytest -n 2 -rxs --cov=oceans tests
+
+    - name: Doctests
+      shell: bash -l {0}
+      run: >
+        micromamba activate TEST
+        && python -m pytest -vv oceans --doctest-modules

.gitignore

@@ -1,5 +1,7 @@
 *.egg-info
 .cache
+.coverage
+.ipynb_checkpoints/
 build/
 dist/
-.ipynb_checkpoints/
+oceans/_version.py

.pre-commit-config.yaml

@@ -1,7 +1,7 @@
 
 repos:
 - repo: https://github.com/pre-commit/pre-commit-hooks
-  rev: v3.4.0
+  rev: v4.4.0
   hooks:
     - id: check-ast
     - id: end-of-file-fixer
@@ -14,34 +14,43 @@ repos:
     - id: trailing-whitespace
     - id: debug-statements
 
-- repo: https://gitlab.com/pycqa/flake8
-  rev: 3.9.0
+
+# - repo: https://github.com/econchick/interrogate
+#   rev: 1.5.0
+#   hooks:
+#     - id: interrogate
+#       exclude: ^(docs|setup.py|tests)
+#       args: [--config=pyproject.toml]
+
+- repo: https://github.com/keewis/blackdoc
+  rev: v0.3.8
   hooks:
-    - id: flake8
-      exclude: docs/source/conf.py
-      args: [--max-line-length=105, "--ignore=E203,W503"]
+    - id: blackdoc
 
-- repo: https://github.com/pycqa/isort
-  rev: 5.7.0
+- repo: https://github.com/charliermarsh/ruff-pre-commit
+  rev: v0.0.253
   hooks:
-    - id: isort
-      additional_dependencies: [toml]
-      args: ["--profile", "black", "--filter-files"]
+    - id: ruff
 
 - repo: https://github.com/psf/black
-  rev: 20.8b1
+  rev: 23.1.0
   hooks:
   - id: black
     language_version: python3
 
-- repo: https://github.com/asottile/pyupgrade
-  rev: v2.10.0
+- repo: https://github.com/codespell-project/codespell
+  rev: v2.2.2
   hooks:
-    - id: pyupgrade
+    - id: codespell
       args:
-        - --py36-plus
+        - --ignore-words-list=pres
 
 - repo: https://github.com/asottile/add-trailing-comma
-  rev: v2.1.0
+  rev: v2.4.0
   hooks:
     - id: add-trailing-comma
+
+- repo: https://github.com/tox-dev/pyproject-fmt
+  rev: "0.9.2"
+  hooks:
+    - id: pyproject-fmt