Make debugger compatible with capturing.

.github/workflows/continuous-integration-workflow.yml

@@ -35,7 +35,7 @@ jobs:
 
       - name: Run unit tests and doctests.
         shell: bash -l {0}
-        run: tox -e pytest -- src tests -m "unit or (not integration and not end_to_end)" --cov=./src --cov-report=xml -n auto
+        run: tox -e pytest -- src tests -m "unit or (not integration and not end_to_end)" --cov=./ --cov-report=xml -n auto
 
       - name: Upload coverage report for unit tests and doctests.
         if: runner.os == 'Linux' && matrix.python-version == '3.8'
@@ -44,7 +44,7 @@ jobs:
 
       - name: Run integration tests.
         shell: bash -l {0}
-        run: tox -e pytest -- src tests -m integration --cov=./src --cov-report=xml -n auto
+        run: tox -e pytest -- src tests -m integration --cov=./ --cov-report=xml -n auto
 
       - name: Upload coverage reports of integration tests.
         if: runner.os == 'Linux' && matrix.python-version == '3.8'
@@ -53,7 +53,7 @@ jobs:
 
       - name: Run end-to-end tests.
         shell: bash -l {0}
-        run: tox -e pytest -- src tests -m end_to_end --cov=./src --cov-report=xml -n auto
+        run: tox -e pytest -- src tests -m end_to_end --cov=./ --cov-report=xml -n auto
 
       - name: Upload coverage reports of end-to-end tests.
         if: runner.os == 'Linux' && matrix.python-version == '3.8'

codecov.yml

@@ -25,4 +25,3 @@ coverage:
 ignore:
   - ".tox/**/*"
   - "setup.py"
-  - "tests/**/*"

docs/changes.rst

@@ -14,6 +14,7 @@ all releases are available on `Anaconda.org <https://anaconda.org/pytask/pytask>
 - :gh:`33` adds a module to apply common parameters to the command line interface.
 - :gh:`34` skips ``pytask_collect_task_teardown`` if task is None.
 - :gh:`35` adds the ability to capture stdout and stderr with the CaptureManager.
+- :gh:`36` reworks the debugger to make it work with the CaptureManager.
 
 
 0.0.8 - 2020-10-04

docs/tutorials/how_to_debug.rst

@@ -20,3 +20,11 @@ If you want to enter the debugger at the start of every task, use
 .. code-block:: console
 
     $ pytask --trace
+
+If you want to use your custom debugger, make sure it is importable and use
+:option:`pytask build --pdbcls`. Here, we change from the standard ``pdb`` debugger to
+IPython's implementation.
+
+.. code-block:: console
+
+    $ pytask --pdbcls=IPython.terminal.debugger:TerminalPdb

src/_pytask/capture.py

@@ -58,6 +58,14 @@ def pytask_extend_command_line_interface(cli):
             help="Per task capturing method.  [default: fd]",
         ),
         click.Option(["-s"], is_flag=True, help="Shortcut for --capture=no."),
+        click.Option(
+            ["--show-capture"],
+            type=click.Choice(["no", "stdout", "stderr", "all"]),
+            help=(
+                "Choose which captured output should be shown for failed tasks.  "
+                "[default: all]"
+            ),
+        ),
     ]
     cli.commands["build"].params.extend(additional_parameters)
 
@@ -80,6 +88,14 @@ def pytask_parse_config(config, config_from_cli, config_from_file):
             callback=_capture_callback,
         )
 
+    config["show_capture"] = get_first_non_none_value(
+        config_from_cli,
+        config_from_file,
+        key="show_capture",
+        default="all",
+        callback=_show_capture_callback,
+    )
+
 
 @hookimpl
 def pytask_post_parse(config):
@@ -106,6 +122,22 @@ def _capture_callback(x):
     else:
         raise ValueError("'capture' can only be one of ['fd', 'no', 'sys', 'tee-sys'].")
 
+    return x
+
+
+def _show_capture_callback(x):
+    """Validate the passed options for showing captured output."""
+    if x in [None, "None", "none"]:
+        x = None
+    elif x in ["no", "stdout", "stderr", "all"]:
+        pass
+    else:
+        raise ValueError(
+            "'show_capture' must be one of ['no', 'stdout', 'stderr', 'all']."
+        )
+
+    return x
+
 
 # Copied from pytest.
 
@@ -126,21 +158,22 @@ def _colorama_workaround() -> None:
 
 
 def _readline_workaround() -> None:
-    """Ensure readline is imported so that it attaches to the correct stdio
-    handles on Windows.
+    """Ensure readline is imported so that it attaches to the correct stdio handles on
+    Windows.
 
-    Pdb uses readline support where available--when not running from the Python
-    prompt, the readline module is not imported until running the pdb REPL.  If
-    running pytest with the --pdb option this means the readline module is not
-    imported until after I/O capture has been started.
+    Pdb uses readline support where available--when not running from the Python prompt,
+    the readline module is not imported until running the pdb REPL.  If running pytest
+    with the --pdb option this means the readline module is not imported until after I/O
+    capture has been started.
 
-    This is a problem for pyreadline, which is often used to implement readline
-    support on Windows, as it does not attach to the correct handles for stdout
-    and/or stdin if they have been redirected by the FDCapture mechanism.  This
-    workaround ensures that readline is imported before I/O capture is setup so
-    that it can attach to the actual stdin/out for the console.
+    This is a problem for pyreadline, which is often used to implement readline support
+    on Windows, as it does not attach to the correct handles for stdout and/or stdin if
+    they have been redirected by the FDCapture mechanism.  This workaround ensures that
+    readline is imported before I/O capture is setup so that it can attach to the actual
+    stdin/out for the console.
 
     See https://github.com/pytest-dev/pytest/pull/1281.
+
     """
     if sys.platform.startswith("win32"):
         try:
@@ -152,19 +185,17 @@ def _readline_workaround() -> None:
 def _py36_windowsconsoleio_workaround(stream: TextIO) -> None:
     """Workaround for Windows Unicode console handling on Python>=3.6.
 
-    Python 3.6 implemented Unicode console handling for Windows. This works
-    by reading/writing to the raw console handle using
-    ``{Read,Write}ConsoleW``.
+    Python 3.6 implemented Unicode console handling for Windows. This works by
+    reading/writing to the raw console handle using ``{Read,Write}ConsoleW``.
 
-    The problem is that we are going to ``dup2`` over the stdio file
-    descriptors when doing ``FDCapture`` and this will ``CloseHandle`` the
-    handles used by Python to write to the console. Though there is still some
-    weirdness and the console handle seems to only be closed randomly and not
-    on the first call to ``CloseHandle``, or maybe it gets reopened with the
-    same handle value when we suspend capturing.
+    The problem is that we are going to ``dup2`` over the stdio file descriptors when
+    doing ``FDCapture`` and this will ``CloseHandle`` the handles used by Python to
+    write to the console. Though there is still some weirdness and the console handle
+    seems to only be closed randomly and not on the first call to ``CloseHandle``, or
+    maybe it gets reopened with the same handle value when we suspend capturing.
 
-    The workaround in this case will reopen stdio with a different fd which
-    also means a different handle by replicating the logic in
+    The workaround in this case will reopen stdio with a different fd which also means a
+    different handle by replicating the logic in
     "Py_lifecycle.c:initstdio/create_stdio".
 
     :param stream:
@@ -384,6 +415,7 @@ class FDCaptureBinary:
     """Capture IO to/from a given OS-level file descriptor.
 
     snap() produces `bytes`.
+
     """
 
     EMPTY_BUFFER = b""
@@ -394,17 +426,17 @@ def __init__(self, targetfd: int) -> None:
         try:
             os.fstat(targetfd)
         except OSError:
-            # FD capturing is conceptually simple -- create a temporary file,
-            # redirect the FD to it, redirect back when done. But when the
-            # target FD is invalid it throws a wrench into this loveley scheme.
-            #
-            # Tests themselves shouldn't care if the FD is valid, FD capturing
-            # should work regardless of external circumstances. So falling back
-            # to just sys capturing is not a good option.
-            #
+            # FD capturing is conceptually simple -- create a temporary file, redirect
+            # the FD to it, redirect back when done. But when the target FD is invalid
+            # it throws a wrench into this loveley scheme.
+
+            # Tests themselves shouldn't care if the FD is valid, FD capturing should
+            # work regardless of external circumstances. So falling back to just sys
+            # capturing is not a good option.
+
             # Further complications are the need to support suspend() and the
-            # possibility of FD reuse (e.g. the tmpfile getting the very same
-            # target FD). The following approach is robust, I believe.
+            # possibility of FD reuse (e.g. the tmpfile getting the very same target
+            # FD). The following approach is robust, I believe.
             self.targetfd_invalid: Optional[int] = os.open(os.devnull, os.O_RDWR)
             os.dup2(self.targetfd_invalid, targetfd)
         else:
@@ -524,11 +556,10 @@ def writeorg(self, data):
 # MultiCapture
 
 
-# This class was a namedtuple, but due to mypy limitation[0] it could not be
-# made generic, so was replaced by a regular class which tries to emulate the
-# pertinent parts of a namedtuple. If the mypy limitation is ever lifted, can
-# make it a namedtuple again.
-# [0]: https://github.com/python/mypy/issues/685
+# This class was a namedtuple, but due to mypy limitation[0] it could not be made
+# generic, so was replaced by a regular class which tries to emulate the pertinent parts
+# of a namedtuple. If the mypy limitation is ever lifted, can make it a namedtuple
+# again. [0]: https://github.com/python/mypy/issues/685
 @final
 @functools.total_ordering
 class CaptureResult(Generic[AnyStr]):

src/_pytask/cli.py

@@ -27,6 +27,7 @@ def _prepare_plugin_manager():
 
 
 def _sort_options_for_each_command_alphabetically(cli):
+    """Sort command line options and arguments for each command alphabetically."""
     for command in cli.commands:
         cli.commands[command].params = sorted(
             cli.commands[command].params, key=lambda x: x.name

src/_pytask/collect.py

@@ -21,7 +21,7 @@
 def pytask_collect(session):
     """Collect tasks."""
     reports = _collect_from_paths(session)
-    tasks = _extract_tasks_from_reports(reports)
+    tasks = _extract_successful_tasks_from_reports(reports)
 
     try:
         session.hook.pytask_collect_modify_tasks(session=session, tasks=tasks)
@@ -91,6 +91,7 @@ def pytask_collect_file_protocol(session, path, reports):
 
 @hookimpl
 def pytask_collect_file(session, path, reports):
+    """Collect a file."""
     if any(path.match(pattern) for pattern in session.config["task_files"]):
         spec = importlib.util.spec_from_file_location(path.stem, str(path))
 
@@ -121,6 +122,7 @@ def pytask_collect_file(session, path, reports):
 
 @hookimpl
 def pytask_collect_task_protocol(session, reports, path, name, obj):
+    """Start protocol for collecting a task."""
     try:
         session.hook.pytask_collect_task_setup(
             session=session, reports=reports, path=path, name=name, obj=obj
@@ -204,12 +206,14 @@ def valid_paths(paths, session):
                 yield path
 
 
-def _extract_tasks_from_reports(reports):
+def _extract_successful_tasks_from_reports(reports):
+    """Extract successful tasks from reports."""
     return [i.task for i in reports if i.successful]
 
 
 @hookimpl
 def pytask_collect_log(session, reports, tasks):
+    """Log collection."""
     tm_width = session.config["terminal_width"]
 
     message = f"Collected {len(tasks)} task(s)."

src/_pytask/collect_command.py

@@ -1,3 +1,4 @@
+"""This module contains the implementation of ``pytask collect``."""
 import pdb
 import sys
 import traceback
@@ -18,6 +19,7 @@ def pytask_extend_command_line_interface(cli: click.Group):
 
 @hookimpl
 def pytask_parse_config(config, config_from_cli):
+    """Parse configuration."""
     config["nodes"] = config_from_cli.get("nodes", False)
 
 

src/_pytask/config.py

@@ -30,7 +30,13 @@
     ".gitignore",
     ".pre-commit-config.yaml",
     ".readthedocs.yml",
+    ".readthedocs.yaml",
+    "readthedocs.yml",
+    "readthedocs.yaml",
     "environment.yml",
+    "pytask.ini",
+    "setup.cfg",
+    "tox.ini",
 ]
 
 IGNORED_FILES_AND_FOLDERS = IGNORED_FILES + IGNORED_FOLDERS