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add-ver
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telatin committed Jul 29, 2022
1 parent e195a55 commit 731fc46
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4 changes: 4 additions & 0 deletions bin/parallel-virfinder.py
Original file line number Diff line number Diff line change
@@ -1,13 +1,15 @@
#!/usr/bin/env python3
# -*- coding: utf-8 -*-

from ensurepip import version
import os
import sys
import argparse
import subprocess
import logging
import tempfile

__VERSION__="0.1.0"
# parse csv
import csv
def parse_csv(filename):
Expand Down Expand Up @@ -105,6 +107,8 @@ def run_virfinder(fasta, output):
logLevel = logging.WARN

logging.basicConfig(format='%(asctime)s [%(levelname)s] %(message)s', level=logLevel)

logging.info("Starting parallel-virfinder v{}".format(__VERSION__))

if not has_r():
logging.error("R is not installed")
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