Repositories
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release-go-update
Data-release-pipeline: Synchronization of gk_central GO instances with Gene Ontology (http://geneontology.org/)
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event-pdf
Generates the Reactome book
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CuratorTool
The Reactome Java API for the relational database and the Curator Tool
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gsa-backend
Backend code of the Kubernetes based ReactomeGSA Analysis System
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Website
Contains the code and configuration for the website
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add-links
This is the AddLinks component of the Release system
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release-common-lib
Data-release-pipeline: Common code for Reactome data-release-pipeline steps
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graph-core
Models the Reactome knowledgebase into a interconnected graph
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content-service
The new Reactome REST API to access the data
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release-update-stable-ids
Data-release-pipeline: Updates stable identifiers of manually curated instances
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disease-digester
To represent the disease-gene binary relationship with a REACTOME overlay
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analysis-service
A RESTful API to access pathway analysis tools
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analysis-core
Pathway enrichment and expression analysis as well as species comparison tool
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data-export
Creates the files to be placed in the download section
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graph-importer
Converts the Reactome knowledgebase into a interconnected graph
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release-qa
A collection of tools to perform QA checks during the Release process.
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ReactomeGraph4R
R package for interfacing with a Reactome Graph Database
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release-jenkins-utils
Data-release-pipeline: Utilities repository that contains files for initializing Release via Jenkins and general-use scripts used in Release
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release-download-directory
Data-release-pipeline: Generation of files for the Reactome website download directory
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release-biomodels
Data-release-pipeline: Insertion of BioModels identifiers cross-references (data generated by https://github.com/reactome/biomodels-mapper) for Pathway instances
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data-release-pipeline
The next generation of the Reactome data release pipeline.
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ReactomeContentService4R
R Interface for Reactome data
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biomodels-mapper
Mapping BioModels to Reactome using analysis results
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stable-id-history
Code to generate a database for Reactome stable id history queries
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