Reactome

Repositories

• release-go-update

  Data-release-pipeline: Synchronization of gk_central GO instances with Gene Ontology (http://geneontology.org/)

  release data-release-pipeline mysql-release
  Java 0 1 2 0 Updated Mar 5, 2021

• analysis-report
  Java AGPL-3.0 1 1 0 1 Updated Mar 5, 2021

• event-pdf

  Generates the Reactome book
  Java 0 1 0 0 Updated Mar 5, 2021

• CuratorTool

  The Reactome Java API for the relational database and the Curator Tool
  Java 5 3 2 2 Updated Mar 4, 2021

• gsa-backend

  Backend code of the Kubernetes based ReactomeGSA Analysis System
  Python 1 2 1 0 Updated Mar 4, 2021

• Website

  Contains the code and configuration for the website
  PHP GPL-2.0 1 5 0 0 Updated Mar 3, 2021

• search-indexer
  Java 3 0 0 0 Updated Mar 3, 2021

• add-links

  This is the AddLinks component of the Release system

  release data-release-pipeline mysql-release
  Java 0 0 13 3 Updated Mar 3, 2021

• release-common-lib

  Data-release-pipeline: Common code for Reactome data-release-pipeline steps

  release data-release-pipeline mysql-release
  Java 0 0 3 0 Updated Mar 3, 2021

• graph-core

  Models the Reactome knowledgebase into a interconnected graph
  Java 4 10 1 0 Updated Mar 3, 2021

• search-core
  Java 1 1 0 0 Updated Mar 3, 2021

• data-content
  Java 3 1 0 0 Updated Mar 3, 2021

• content-service

  The new Reactome REST API to access the data
  Java 3 7 0 2 Updated Mar 3, 2021

• release-update-stable-ids

  Data-release-pipeline: Updates stable identifiers of manually curated instances

  release data-release-pipeline mysql-release
  Java 0 0 0 1 Updated Mar 2, 2021

• disease-digester

  To represent the disease-gene binary relationship with a REACTOME overlay
  JavaScript 0 0 0 0 Updated Feb 26, 2021

• analysis-service

  A RESTful API to access pathway analysis tools
  Java 2 3 1 2 Updated Feb 26, 2021

• analysis-core

  Pathway enrichment and expression analysis as well as species comparison tool
  Java 5 4 1 0 Updated Feb 26, 2021

• data-export

  Creates the files to be placed in the download section
  Java 1 2 0 0 Updated Feb 26, 2021

• graph-importer

  Converts the Reactome knowledgebase into a interconnected graph
  Java 2 7 0 0 Updated Feb 25, 2021

• release-qa

  A collection of tools to perform QA checks during the Release process.
  Java 1 2 4 6 Updated Feb 23, 2021

• release-cosmic-update

  Code for updating COSMIC identifiers.

  cosmic data-release-pipeline pre-slice
  Java Apache-2.0 1 0 0 0 Updated Feb 22, 2021

• ReactomeGraph4R

  R package for interfacing with a Reactome Graph Database
  R Apache-2.0 1 1 3 0 Updated Feb 21, 2021

• release-jenkins-utils

  Data-release-pipeline: Utilities repository that contains files for initializing Release via Jenkins and general-use scripts used in Release

  release data-release-pipeline
  Groovy 1 0 3 0 Updated Feb 16, 2021

• release-download-directory

  Data-release-pipeline: Generation of files for the Reactome website download directory

  release data-release-pipeline mysql-release
  Java 0 0 5 0 Updated Feb 12, 2021

• release-biomodels

  Data-release-pipeline: Insertion of BioModels identifiers cross-references (data generated by https://github.com/reactome/biomodels-mapper) for Pathway instances

  release data-release-pipeline mysql-release
  Java 0 0 2 0 Updated Feb 11, 2021

• data-release-pipeline

  The next generation of the Reactome data release pipeline.
  Java 1 1 22 22 Updated Feb 10, 2021

• ReactomeContentService4R

  R Interface for Reactome data
  R Apache-2.0 1 1 1 (1 issue needs help) 0 Updated Feb 9, 2021

• reaction-exporter
  Java 1 0 0 0 Updated Feb 3, 2021

• biomodels-mapper

  Mapping BioModels to Reactome using analysis results
  Java 0 3 0 0 Updated Jan 22, 2021

• stable-id-history

  Code to generate a database for Reactome stable id history queries
  Java 0 0 0 2 Updated Jan 21, 2021