PCNE v0.2.0

Added

• --busco: allow to run busco and use single-copy genes as baseline for coverage depth
• --busco-lineage: allow to choose proper lineage for busco mode
• --min-quality: allow to set a minimum quality of reads alignment
• --filter: allow to filter out reads
• --plot: add a barplot of copy number per plasmid
• --single-plasmid: allow to use as input a fragmented plasmid (FASTA)

Fixed:

• Lots of typos
• Printed output

Other:

• Improved documentation (README)
• Changed parameters specification to improve clarity (ex -c or --chromosome)