v3.0.0

What's Changed

• fix: pin requires-python <3.13 to prevent pyarrow 17.x build failure by @daylight-00 in #75
• Docs: Fixing outdated functions in the tutorial by @rclune in #90
• Docs: Add pyarrow warning to README by @rclune in #91
• docs: How to Train a Model with AtomWorks tutorial by @rclune in #82
• Fix link to tutorial files in Parts 2-4 of the how to build a model t… by @rclune in #100
• docs[installation]: Add CCD sync to test setup instructions by @Emrys-Merlin in #101
• Fix version switcher URLs after Pages migration by @kierandidi in #93
• test(io): cover interrupted parser cache writes by @hwendler in #98
• fix(ml): don't require CCD leaving groups when substituting residues by @benz0id in #95
• Docs: AtomWorks Cookbook by @rclune in #92
• feat: add support for LMDB molecular/materials science datasets from FAIR Chemistry by @amorehead in #83
• Fix/update packages to address security alert by @woodsh17 in #89
• feat: add mmseqs server usage by @r-krishna in #96
• docs: add AtomWorks 3.0 migration guides by @m1c0l in #103
• feat: sync remaining dev chemistry and ColabFold updates for 3.0 by @nscorley in #113
• release: prepare AtomWorks 3.0 by @kierandidi in #114
• docs: fix Sphinx warnings for AtomWorks 3.0 by @kierandidi in #115
• docs: finish MSA CLI and preprocessing documentation for 3.0 by @nscorley in #117
• release: AtomWorks 3.0.0 by @nscorley in #116

New Contributors

• @daylight-00 made their first contribution in #75
• @Emrys-Merlin made their first contribution in #101
• @hwendler made their first contribution in #98
• @benz0id made their first contribution in #95
• @amorehead made their first contribution in #83
• @r-krishna made their first contribution in #96
• @m1c0l made their first contribution in #103

Full Changelog: v2.2.1...v3.0.0