Parthasarathy Lab, Dept. of Physics, University of Oregon
- 10 followers
- Eugene, OR
- https://pages.uoregon.edu/raghu/
Popular repositories Loading
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TrackingGUI_and_Localization_Public
TrackingGUI_and_Localization_Public PublicParthasarathy Lab particle localization files and particle tracking GUI, especially making use of radial symmetry based localization (Public Repository)
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HighThroughput
HighThroughput PublicSoftware for an automated, high-throughput microscope which images live zebrafish queued in a fluidic circuit.
MATLAB 3
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Ganz-Baker-Image-Velocimetry-Analysis
Ganz-Baker-Image-Velocimetry-Analysis PublicA set of Matlab functions for analyzing image velocimetry data on biological motility
MATLAB 2
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Klamath-CLS-Control-Python-
Klamath-CLS-Control-Python- PublicKlamath CLS microscope control code for use with PycroManager
Python 1
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Bacterial_Automated_Pipeline
Bacterial_Automated_Pipeline PublicPipeline for gut bacterial image processing
Python
Repositories
- Social-Behavior Public
A collection of Python programs used to analyze social behavior in zebrafish.
rplab/Social-Behavior’s past year of commit activity - rplab_image_analysis Public
rplab/rplab_image_analysis’s past year of commit activity - Immune_Cell_Motion_Analysis_2025 Public
Image analysis pipeline for immune cell motion segmentation and tracking, contains supporting code for paper "Characterizing trajectories of innate immune cells in larval zebrafish", Piyush Amitabh and Raghuveer Parthasarathy
rplab/Immune_Cell_Motion_Analysis_2025’s past year of commit activity - LS_Pycro_App Public
pycromanager-based microscope control software for Parthasarathy Lab light sheet microscopes
rplab/LS_Pycro_App’s past year of commit activity - Misc_code_public Public
Misc. code that doesn't fall into other repositories, to be publicly accessible.
rplab/Misc_code_public’s past year of commit activity - Cell_Segmentation_3D_2024 Public
Segmentation of cells from 3D light sheet microscopy images, especially for 2024 T6SS paper
rplab/Cell_Segmentation_3D_2024’s past year of commit activity - Ganz-Baker-Image-Velocimetry-Analysis Public
A set of Matlab functions for analyzing image velocimetry data on biological motility
rplab/Ganz-Baker-Image-Velocimetry-Analysis’s past year of commit activity - WIL_Pycro_Control_App Public
Pycro-Manager based microscope control application for use with Parthasarathy Lab light sheet microscope located in Willamette Hall
rplab/WIL_Pycro_Control_App’s past year of commit activity
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