Upgrade igraph to 0.9.10 #34491

mkoeppe · 2022-09-04T14:28:23Z

Suggested in https://sagemath.zulipchat.com/#narrow/stream/271086-feedback/topic/hello/near/297088245

Marked "critical" because we set a necessary upper bound for the version of igraph in spkg-configure.m4

CC: @dcoudert @dimpase

Component: packages: optional

Author: Matthias Koeppe

Branch/Commit: d51e167

Reviewer: David Coudert

Issue created by migration from https://trac.sagemath.org/ticket/34491

The text was updated successfully, but these errors were encountered:

mkoeppe · 2022-09-04T14:31:44Z

Branch: u/mkoeppe/upgrade_igraph_to_0_9_10

mkoeppe · 2022-09-04T14:32:28Z

New commits:

`0d4f3d5`	`build/pkgs/igraph: Update to 0.9.10`

mkoeppe · 2022-09-04T14:32:28Z

Author: Matthias Koeppe

mkoeppe · 2022-09-04T14:32:28Z

Commit: 0d4f3d5

mkoeppe · 2022-09-04T14:36:24Z

comment:3

Installs without problems on macOS (Intel), haven't tested anything else.

dcoudert · 2022-09-04T15:27:57Z

comment:4

install ok on fedora 35.

I'm currently upgrading homebrew (and in graph). Will try soon with brew version of igraph.

dcoudert · 2022-09-06T11:51:35Z

comment:5

I'm on macOS 12.5.1 and after a brew upgrade I have:

sapristi:sage dcoudert$ ls /usr/local/Cellar/igraph/
0.9.10

In a fresh shell, I did: make distclean, .bootstrap, source .homebrew-build-env, ./configure enable-download-from-upstream-url and make.

I'm now trying this ticket and so did make igraph.

Configure says:

igraph:                         using system package; SPKG will not be installed

But it tries to download sources anyway, and of course fails to do so.

make --no-print-directory igraph-SAGE_LOCAL-no-deps
[igraph-0.9.10] Attempting to download package igraph-0.9.10.tar.gz from mirrors
[igraph-0.9.10] Downloading the Sage mirror list
[igraph-0.9.10] Searching fastest mirror
[igraph-0.9.10]   195ms: http://files.sagemath.org/
[igraph-0.9.10]   582ms: http://linorg.usp.br/sage/
[igraph-0.9.10]   116ms: https://ftp.rediris.es/mirror/sagemath/
[igraph-0.9.10]  1142ms: https://ftp.riken.jp/sagemath/
[igraph-0.9.10]   954ms: https://ftp.sun.ac.za/ftp/pub/mirrors/www.sagemath.org/
[igraph-0.9.10]  1148ms: https://ftp.yz.yamagata-u.ac.jp/pub/math/sage/
[igraph-0.9.10]   315ms: https://mirror-hk.koddos.net/sagemath/
[igraph-0.9.10]  1912ms: https://mirror.aarnet.edu.au/pub/sage/
[igraph-0.9.10]   217ms: https://mirror.csclub.uwaterloo.ca/sage/
[igraph-0.9.10]   105ms: https://mirror.dogado.de/sage/
[igraph-0.9.10]    80ms: https://mirror.koddos.net/sagemath/
[igraph-0.9.10]    66ms: https://mirror.lyrahosting.com/sagemath/
[igraph-0.9.10]   199ms: https://mirror.marwan.ma/sage/
[igraph-0.9.10]   497ms: https://mirror.rcg.sfu.ca/mirror/sage/
[igraph-0.9.10]   419ms: https://mirror.ufs.ac.za/sagemath/
[igraph-0.9.10]   140ms: https://mirror.yandex.ru/mirrors/sage.math.washington.edu/
[igraph-0.9.10]   335ms: https://mirrors.aliyun.com/sagemath/
[igraph-0.9.10]   124ms: https://mirrors.mit.edu/sage/
[igraph-0.9.10]   936ms: https://mirrors.nju.edu.cn/sagemath/
[igraph-0.9.10]   942ms: https://mirrors.tuna.tsinghua.edu.cn/sagemath/
[igraph-0.9.10]   163ms: https://mirrors.up.pt/pub/sage/
[igraph-0.9.10]  1581ms: https://mirrors.ustc.edu.cn/sagemath/
[igraph-0.9.10]   277ms: https://mirrors.xmission.com/sage/
[igraph-0.9.10]   744ms: https://sage.mirror.garr.it/mirrors/sage/
[igraph-0.9.10]   701ms: https://sagemath.c3sl.ufpr.br/
[igraph-0.9.10]   604ms: https://sagemath.mirror.ac.za/
[igraph-0.9.10]    52ms: https://www-ftp.lip6.fr/pub/math/sagemath/
[igraph-0.9.10]    84ms: https://www.mirrorservice.org/sites/www.sagemath.org/
[igraph-0.9.10] Fastest mirror: https://www-ftp.lip6.fr/pub/math/sagemath/
[igraph-0.9.10] https://www-ftp.lip6.fr/pub/math/sagemath/spkg/upstream/igraph/igraph-0.9.10.tar.gz
[igraph-0.9.10] [xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx]
[igraph-0.9.10] ERROR [transfer|run:135]: [Errno socket error] [Errno 404] Not Found: '//www-ftp.lip6.fr/pub/math/sagemath/spkg/upstream/igraph/igraph-0.9.10.tar.gz'
[igraph-0.9.10] https://mirror.lyrahosting.com/sagemath/spkg/upstream/igraph/igraph-0.9.10.tar.gz
[igraph-0.9.10] [xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx]
[igraph-0.9.10] ERROR [transfer|run:135]: [Errno socket error] [Errno 404] Not Found: '//mirror.lyrahosting.com/sagemath/spkg/upstream/igraph/igraph-0.9.10.tar.gz'
[igraph-0.9.10] https://mirror.koddos.net/sagemath/spkg/upstream/igraph/igraph-0.9.10.tar.gz
[igraph-0.9.10] [xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx]
[igraph-0.9.10] ERROR [transfer|run:135]: [Errno socket error] [Errno 404] Not Found: '//mirror.koddos.net/sagemath/spkg/upstream/igraph/igraph-0.9.10.tar.gz'
[igraph-0.9.10] https://www.mirrorservice.org/sites/www.sagemath.org/spkg/upstream/igraph/igraph-0.9.10.tar.gz
[igraph-0.9.10] [xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx]
[igraph-0.9.10] ERROR [transfer|run:135]: [Errno socket error] [Errno 404] Not Found: '//www.mirrorservice.org/sites/www.sagemath.org/spkg/upstream/igraph/igraph-0.9.10.tar.gz'
[igraph-0.9.10] https://mirror.dogado.de/sage/spkg/upstream/igraph/igraph-0.9.10.tar.gz
[igraph-0.9.10] [xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx]
[igraph-0.9.10] ERROR [transfer|run:135]: [Errno socket error] [Errno 404] Not Found: '//mirror.dogado.de/sage/spkg/upstream/igraph/igraph-0.9.10.tar.gz'
[igraph-0.9.10] https://ftp.rediris.es/mirror/sagemath/spkg/upstream/igraph/igraph-0.9.10.tar.gz
[igraph-0.9.10] [xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx]
[igraph-0.9.10] ERROR [transfer|run:135]: [Errno socket error] [Errno 404] Not Found: '//ftp.rediris.es/mirror/sagemath/spkg/upstream/igraph/igraph-0.9.10.tar.gz'
[igraph-0.9.10] https://mirrors.mit.edu/sage/spkg/upstream/igraph/igraph-0.9.10.tar.gz
[igraph-0.9.10] [xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx]
[igraph-0.9.10] ERROR [transfer|run:135]: [Errno socket error] [Errno 404] Not Found: '//mirrors.mit.edu/sage/spkg/upstream/igraph/igraph-0.9.10.tar.gz'
[igraph-0.9.10] https://mirror.yandex.ru/mirrors/sage.math.washington.edu/spkg/upstream/igraph/igraph-0.9.10.tar.gz
[igraph-0.9.10] [xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx]
[igraph-0.9.10] ERROR [transfer|run:135]: [Errno socket error] [Errno 404] Not Found: '//mirror.yandex.ru/mirrors/sage.math.washington.edu/spkg/upstream/igraph/igraph-0.9.10.tar.gz'
[igraph-0.9.10] https://mirrors.up.pt/pub/sage/spkg/upstream/igraph/igraph-0.9.10.tar.gz
[igraph-0.9.10] [xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx]
[igraph-0.9.10] ERROR [transfer|run:135]: [Errno socket error] [Errno 404] Not Found: '//mirrors.up.pt/pub/sage/spkg/upstream/igraph/igraph-0.9.10.tar.gz'
[igraph-0.9.10] http://files.sagemath.org/spkg/upstream/igraph/igraph-0.9.10.tar.gz
[igraph-0.9.10] [xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx]
[igraph-0.9.10] ERROR [transfer|run:135]: [Errno socket error] [Errno 404] Not Found: '//files.sagemath.org/spkg/upstream/igraph/igraph-0.9.10.tar.gz'
[igraph-0.9.10] https://mirror.marwan.ma/sage/spkg/upstream/igraph/igraph-0.9.10.tar.gz
[igraph-0.9.10] [xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx]
[igraph-0.9.10] ERROR [transfer|run:135]: [Errno socket error] [Errno 404] Not Found: '//mirror.marwan.ma/sage/spkg/upstream/igraph/igraph-0.9.10.tar.gz'
[igraph-0.9.10] https://mirror.csclub.uwaterloo.ca/sage/spkg/upstream/igraph/igraph-0.9.10.tar.gz
[igraph-0.9.10] [xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx]
[igraph-0.9.10] ERROR [transfer|run:135]: [Errno socket error] [Errno 404] Not Found: '//mirror.csclub.uwaterloo.ca/sage/spkg/upstream/igraph/igraph-0.9.10.tar.gz'
[igraph-0.9.10] https://mirrors.xmission.com/sage/spkg/upstream/igraph/igraph-0.9.10.tar.gz
[igraph-0.9.10] [xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx]
[igraph-0.9.10] ERROR [transfer|run:135]: [Errno socket error] [Errno 404] Not Found: '//mirrors.xmission.com/sage/spkg/upstream/igraph/igraph-0.9.10.tar.gz'
[igraph-0.9.10] https://mirror-hk.koddos.net/sagemath/spkg/upstream/igraph/igraph-0.9.10.tar.gz
[igraph-0.9.10] [xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx]
[igraph-0.9.10] ERROR [transfer|run:135]: [Errno socket error] [Errno 404] Not Found: '//mirror-hk.koddos.net/sagemath/spkg/upstream/igraph/igraph-0.9.10.tar.gz'
[igraph-0.9.10] https://mirrors.aliyun.com/sagemath/spkg/upstream/igraph/igraph-0.9.10.tar.gz
[igraph-0.9.10] [xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx]
[igraph-0.9.10] ERROR [transfer|run:135]: [Errno socket error] [Errno 404] Not Found: '//mirrors.aliyun.com/sagemath/spkg/upstream/igraph/igraph-0.9.10.tar.gz'
[igraph-0.9.10] https://mirror.ufs.ac.za/sagemath/spkg/upstream/igraph/igraph-0.9.10.tar.gz
[igraph-0.9.10] [xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx]
[igraph-0.9.10] ERROR [transfer|run:135]: [Errno socket error] [Errno 404] Not Found: '//mirror.ufs.ac.za/sagemath/spkg/upstream/igraph/igraph-0.9.10.tar.gz'
[igraph-0.9.10] https://mirror.rcg.sfu.ca/mirror/sage/spkg/upstream/igraph/igraph-0.9.10.tar.gz
[igraph-0.9.10] [xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx]
[igraph-0.9.10] ERROR [transfer|run:135]: [Errno socket error] [Errno 404] Not Found: '//mirror.rcg.sfu.ca/mirror/sage/spkg/upstream/igraph/igraph-0.9.10.tar.gz'
[igraph-0.9.10] http://linorg.usp.br/sage/spkg/upstream/igraph/igraph-0.9.10.tar.gz
[igraph-0.9.10] [xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx]
[igraph-0.9.10] ERROR [transfer|run:135]: [Errno socket error] [Errno 404] Not Found: '//linorg.usp.br/sage/spkg/upstream/igraph/igraph-0.9.10.tar.gz'
[igraph-0.9.10] https://sagemath.mirror.ac.za/spkg/upstream/igraph/igraph-0.9.10.tar.gz
[igraph-0.9.10] [xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx]
[igraph-0.9.10] ERROR [transfer|run:135]: [Errno socket error] [Errno 404] Not Found: '//sagemath.mirror.ac.za/spkg/upstream/igraph/igraph-0.9.10.tar.gz'
[igraph-0.9.10] https://sagemath.c3sl.ufpr.br/spkg/upstream/igraph/igraph-0.9.10.tar.gz
[igraph-0.9.10] [xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx]
[igraph-0.9.10] ERROR [transfer|run:135]: [Errno socket error] [Errno 404] Not Found: '//sagemath.c3sl.ufpr.br/spkg/upstream/igraph/igraph-0.9.10.tar.gz'
[igraph-0.9.10] https://sage.mirror.garr.it/mirrors/sage/spkg/upstream/igraph/igraph-0.9.10.tar.gz
[igraph-0.9.10] [xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx]
[igraph-0.9.10] ERROR [transfer|run:135]: [Errno socket error] [Errno 404] Not Found: '//sage.mirror.garr.it/mirrors/sage/spkg/upstream/igraph/igraph-0.9.10.tar.gz'
[igraph-0.9.10] https://mirrors.nju.edu.cn/sagemath/spkg/upstream/igraph/igraph-0.9.10.tar.gz
[igraph-0.9.10] [xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx]
[igraph-0.9.10] ERROR [transfer|run:135]: [Errno socket error] [Errno 404] Not Found: '//mirrors.nju.edu.cn/sagemath/spkg/upstream/igraph/igraph-0.9.10.tar.gz'
[igraph-0.9.10] https://mirrors.tuna.tsinghua.edu.cn/sagemath/spkg/upstream/igraph/igraph-0.9.10.tar.gz
[igraph-0.9.10] [xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx]
[igraph-0.9.10] ERROR [transfer|run:135]: [Errno socket error] [Errno 404] Not Found: '//mirrors.tuna.tsinghua.edu.cn/sagemath/spkg/upstream/igraph/igraph-0.9.10.tar.gz'
[igraph-0.9.10] https://ftp.sun.ac.za/ftp/pub/mirrors/www.sagemath.org/spkg/upstream/igraph/igraph-0.9.10.tar.gz
[igraph-0.9.10] [xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx]
[igraph-0.9.10] ERROR [transfer|run:135]: [Errno socket error] [Errno 404] Not Found: '//ftp.sun.ac.za/ftp/pub/mirrors/www.sagemath.org/spkg/upstream/igraph/igraph-0.9.10.tar.gz'
[igraph-0.9.10] https://ftp.riken.jp/sagemath/spkg/upstream/igraph/igraph-0.9.10.tar.gz
[igraph-0.9.10] [xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx]
[igraph-0.9.10] ERROR [transfer|run:135]: [Errno socket error] [Errno 404] Not Found: '//ftp.riken.jp/sagemath/spkg/upstream/igraph/igraph-0.9.10.tar.gz'
[igraph-0.9.10] https://ftp.yz.yamagata-u.ac.jp/pub/math/sage/spkg/upstream/igraph/igraph-0.9.10.tar.gz
[igraph-0.9.10] [xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx]
[igraph-0.9.10] ERROR [transfer|run:135]: [Errno socket error] [Errno 404] Not Found: '//ftp.yz.yamagata-u.ac.jp/pub/math/sage/spkg/upstream/igraph/igraph-0.9.10.tar.gz'
[igraph-0.9.10] https://mirrors.ustc.edu.cn/sagemath/spkg/upstream/igraph/igraph-0.9.10.tar.gz
[igraph-0.9.10] [xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx]
[igraph-0.9.10] ERROR [transfer|run:135]: [Errno socket error] [Errno 404] Not Found: '//mirrors.ustc.edu.cn/sagemath/spkg/upstream/igraph/igraph-0.9.10.tar.gz'
[igraph-0.9.10] https://mirror.aarnet.edu.au/pub/sage/spkg/upstream/igraph/igraph-0.9.10.tar.gz
[igraph-0.9.10] [xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx]
[igraph-0.9.10] ERROR [transfer|run:135]: [Errno socket error] [Errno 404] Not Found: '//mirror.aarnet.edu.au/pub/sage/spkg/upstream/igraph/igraph-0.9.10.tar.gz'
[igraph-0.9.10] http://sagepad.org/spkg/upstream/igraph/igraph-0.9.10.tar.gz
[igraph-0.9.10] [xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx]
[igraph-0.9.10] ERROR [transfer|run:135]: [Errno socket error] [Errno 404] Not Found: '//sagepad.org/spkg/upstream/igraph/igraph-0.9.10.tar.gz'
[igraph-0.9.10] Attempting to download from https://github.com/igraph/igraph/releases/download/0.9.10/igraph-0.9.10.tar.gz
[igraph-0.9.10] [xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx]
[igraph-0.9.10] ERROR [transfer|run:135]: [Errno socket error] [Errno 502] Bad Gateway: '//github.com/igraph/igraph/releases/download/0.9.10/igraph-0.9.10.tar.gz'
[igraph-0.9.10] ************************************************************************
[igraph-0.9.10] Traceback (most recent call last):
[igraph-0.9.10]   File "/usr/local/Cellar/python@3.10/3.10.6_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/urllib/request.py", line 1788, in open
[igraph-0.9.10]     return getattr(self, name)(url)
[igraph-0.9.10]   File "/usr/local/Cellar/python@3.10/3.10.6_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/urllib/request.py", line 1997, in open_https
[igraph-0.9.10]     return self._open_generic_http(self._https_connection, url, data)
[igraph-0.9.10]   File "/usr/local/Cellar/python@3.10/3.10.6_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/urllib/request.py", line 1960, in _open_generic_http
[igraph-0.9.10]     return self.http_error(
[igraph-0.9.10]   File "/usr/local/Cellar/python@3.10/3.10.6_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/urllib/request.py", line 1982, in http_error
[igraph-0.9.10]     return self.http_error_default(url, fp, errcode, errmsg, headers)
[igraph-0.9.10]   File "/Users/dcoudert/sage/build/bin/../sage_bootstrap/download/transfer.py", line 107, in http_error_default
[igraph-0.9.10]     raise DownloadError(errcode, errmsg, url)
[igraph-0.9.10] sage_bootstrap.download.transfer.DownloadError: [Errno 502] Bad Gateway: '//github.com/igraph/igraph/releases/download/0.9.10/igraph-0.9.10.tar.gz'
[igraph-0.9.10] 
[igraph-0.9.10] During handling of the above exception, another exception occurred:
[igraph-0.9.10] 
[igraph-0.9.10] Traceback (most recent call last):
[igraph-0.9.10]   File "/Users/dcoudert/sage/build/bin/../sage_bootstrap/tarball.py", line 175, in download
[igraph-0.9.10]     Download(url, destination).run()
[igraph-0.9.10]   File "/Users/dcoudert/sage/build/bin/../sage_bootstrap/download/transfer.py", line 137, in run
[igraph-0.9.10]     raise error
[igraph-0.9.10]   File "/Users/dcoudert/sage/build/bin/../sage_bootstrap/download/transfer.py", line 128, in run
[igraph-0.9.10]     filename, info = opener.retrieve(
[igraph-0.9.10]   File "/usr/local/Cellar/python@3.10/3.10.6_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/urllib/request.py", line 1822, in retrieve
[igraph-0.9.10]     fp = self.open(url, data)
[igraph-0.9.10]   File "/usr/local/Cellar/python@3.10/3.10.6_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/urllib/request.py", line 1794, in open
[igraph-0.9.10]     raise OSError('socket error', msg).with_traceback(sys.exc_info()[2])
[igraph-0.9.10]   File "/usr/local/Cellar/python@3.10/3.10.6_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/urllib/request.py", line 1788, in open
[igraph-0.9.10]     return getattr(self, name)(url)
[igraph-0.9.10]   File "/usr/local/Cellar/python@3.10/3.10.6_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/urllib/request.py", line 1997, in open_https
[igraph-0.9.10]     return self._open_generic_http(self._https_connection, url, data)
[igraph-0.9.10]   File "/usr/local/Cellar/python@3.10/3.10.6_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/urllib/request.py", line 1960, in _open_generic_http
[igraph-0.9.10]     return self.http_error(
[igraph-0.9.10]   File "/usr/local/Cellar/python@3.10/3.10.6_2/Frameworks/Python.framework/Versions/3.10/lib/python3.10/urllib/request.py", line 1982, in http_error
[igraph-0.9.10]     return self.http_error_default(url, fp, errcode, errmsg, headers)
[igraph-0.9.10]   File "/Users/dcoudert/sage/build/bin/../sage_bootstrap/download/transfer.py", line 107, in http_error_default
[igraph-0.9.10]     raise DownloadError(errcode, errmsg, url)
[igraph-0.9.10] OSError: [Errno socket error] [Errno 502] Bad Gateway: '//github.com/igraph/igraph/releases/download/0.9.10/igraph-0.9.10.tar.gz'
[igraph-0.9.10] 
[igraph-0.9.10] During handling of the above exception, another exception occurred:
[igraph-0.9.10] 
[igraph-0.9.10] Traceback (most recent call last):
[igraph-0.9.10]   File "/Users/dcoudert/sage/build/bin/../sage_bootstrap/download/cmdline.py", line 126, in run_safe
[igraph-0.9.10]     run()
[igraph-0.9.10]   File "/Users/dcoudert/sage/build/bin/../sage_bootstrap/download/cmdline.py", line 108, in run
[igraph-0.9.10]     app.download_tarball(args.url_or_tarball, args.destination, args.allow_upstream)
[igraph-0.9.10]   File "/Users/dcoudert/sage/build/bin/../sage_bootstrap/download/app.py", line 41, in download_tarball
[igraph-0.9.10]     tarball.download(allow_upstream=allow_upstream)
[igraph-0.9.10]   File "/Users/dcoudert/sage/build/bin/../sage_bootstrap/tarball.py", line 177, in download
[igraph-0.9.10]     raise FileNotMirroredError('tarball does not exist on mirror network and neither at the upstream URL')
[igraph-0.9.10] sage_bootstrap.tarball.FileNotMirroredError: tarball does not exist on mirror network and neither at the upstream URL
[igraph-0.9.10] ************************************************************************
[igraph-0.9.10] ************************************************************************
[igraph-0.9.10] Error downloading igraph-0.9.10.tar.gz
[igraph-0.9.10] ************************************************************************
[igraph-0.9.10] Please email sage-devel (http://groups.google.com/group/sage-devel)
[igraph-0.9.10] explaining the problem and including the log files
[igraph-0.9.10]   /Users/dcoudert/sage/logs/pkgs/igraph-0.9.10.log
[igraph-0.9.10] and
[igraph-0.9.10]   /Users/dcoudert/sage/config.log
[igraph-0.9.10] Describe your computer, operating system, etc.
[igraph-0.9.10] ************************************************************************
make[2]: *** [igraph-SAGE_LOCAL-no-deps] Error 1
make[1]: *** [/Users/dcoudert/sage/local/var/lib/sage/installed/igraph-0.9.10] Error 2

real	0m44.111s
user	0m1.435s
sys	0m0.866s
***************************************************************
Error building Sage.

The following package(s) may have failed to build (not necessarily
during this run of 'make igraph'):

* package:         igraph-0.9.10
  last build time: 6 sep 13:41
  log file:        /Users/dcoudert/sage/logs/pkgs/igraph-0.9.10.log

It is safe to delete any log files and build directories, but they
contain information that is helpful for debugging build problems.
WARNING: If you now run 'make' again, the build directory of the
same version of the package will, by default, be deleted. Set the
environment variable SAGE_KEEP_BUILT_SPKGS=yes to prevent this.

make: *** [igraph] Error 1

What's wrong here ?

dimpase · 2022-09-06T12:11:03Z

comment:6

it should be

./configure --enable-download-from-upstream-url

dcoudert · 2022-09-06T12:22:33Z

comment:7

just a mistake of copy paste in the comment, but it's what I did.

The question is more: why is it trying to download from upstream when I have homebrew install if graph and that this local install has been detected during configure ?

dimpase · 2022-09-06T12:51:23Z

comment:8

Replying to David Coudert:

just a mistake of copy paste in the comment, but it's what I did.

The question is more: why is it trying to download from upstream when I have homebrew install if graph and that this local install has been detected during configure ?

What's in config.log regarding igraph ? Was it recognised?

dimpase · 2022-09-06T12:52:43Z

comment:9

in case, run
make igraph-clean igraph-uninstall before proceeeding, to remove an old version...

dcoudert · 2022-09-06T13:52:00Z

comment:10

Replying to Dima Pasechnik:

What's in config.log regarding igraph ? Was it recognised?

All lines of config.log containing graph

## ------------------------------------------------------- ##
## Checking whether SageMath should install SPKG igraph... ##
## ------------------------------------------------------- ##
configure:29442: checking whether any of glpk openblas gmp is installed as or will be installed as SPKG
configure:29452: result: no
configure:29457: checking for igraph >= 0.9.5
configure:29464: $PKG_CONFIG --exists --print-errors "igraph >= 0.9.5"
configure:29467: $? = 0
configure:29481: $PKG_CONFIG --exists --print-errors "igraph >= 0.9.5"
configure:29484: $? = 0
configure:29524: result: yes
configure:29537: will use system package and not install SPKG igraph
...
configure:71199: result: igraph:                         using system package; SPKG will not be installed
...
configure:98075: result: python_igraph:                  optional, SPKG version 0.9.11 is already installed
...
ac_cv_env_IGRAPH_CFLAGS_set=
ac_cv_env_IGRAPH_CFLAGS_value=
ac_cv_env_IGRAPH_LIBS_set=
ac_cv_env_IGRAPH_LIBS_value=
...
pkg_cv_IGRAPH_CFLAGS=-I/usr/local/Cellar/igraph/0.9.10/include/igraph
pkg_cv_IGRAPH_LIBS='-L/usr/local/Cellar/igraph/0.9.10/lib -ligraph'
...
    igraph \
    igraph \
...
    python_igraph \
    python_igraph \
    python_igraph \
...
IGRAPH_CFLAGS='-I/usr/local/Cellar/igraph/0.9.10/include/igraph'
IGRAPH_LIBS='-L/usr/local/Cellar/igraph/0.9.10/lib -ligraph'
...
SAGE_ENABLE_igraph='no'
...
SAGE_ENABLE_python_igraph='yes'
...
deps_igraph = $(MP_LIBRARY) glpk $(BLAS) suitesparse | cmake
...
deps_python_igraph = igraph texttable $(PYTHON) | $(PYTHON_TOOLCHAIN)
...
trees_igraph = SAGE_LOCAL
...
trees_python_igraph = SAGE_VENV
...
vers_igraph = 0.9.10
...
vers_python_igraph = 0.9.11
...

I did make igraph-clean igraph-uninstall and then make igraph and now it has downloaded from upstream and compiled the code. It's working well.

However, I don't understand why it's not using the homebrew install

dimpase · 2022-09-06T14:07:00Z

comment:11

make X for an spkg X will always install X from source, that's why.

dcoudert · 2022-09-06T14:31:05Z

Reviewer: David Coudert

dcoudert · 2022-09-06T14:31:05Z

comment:12

I didn't know that.

So on macOS, it's working well when we compile the source.
I also tried to remove igraph and python_igraph, and then do sage -i python_igraph and it's working well (it uses the homebrew install).

So for me this patch is good to go.

mkoeppe · 2022-09-06T15:07:23Z

comment:13

Upstream cautions that igraph 0.10 is not compatible - https://sagemath.zulipchat.com/#narrow/stream/271086-feedback/topic/hello/near/297322407

So we should either set a version upper bound in igraph's spkg-configure, or to the upgrade of both igraph, python-igraph to 0.10

sagetrac-git · 2022-09-06T15:12:45Z

Changed commit from 0d4f3d5 to d51e167

sagetrac-git · 2022-09-06T15:12:45Z

Branch pushed to git repo; I updated commit sha1. New commits:

`d51e167`	`build/pkgs/igraph/spkg-configure.m4: Reject igraph >= 0.10`

mkoeppe · 2022-09-06T15:13:19Z

comment:15

Unlikely that this would still make it into Sage 9.7, but here we go

mkoeppe · 2022-09-06T15:14:31Z

comment:16

Follow-up: #34498 Update igraph, python_igraph to 0.10

dcoudert · 2022-09-06T15:30:10Z

comment:18

LGTM.

vbraun · 2022-09-20T20:23:23Z

Changed branch from u/mkoeppe/upgrade_igraph_to_0_9_10 to d51e167

mkoeppe added this to the sage-9.8 milestone Sep 4, 2022

mkoeppe added c: packages: optional labels Sep 4, 2022

mkoeppe added the s: needs review label Sep 4, 2022

dcoudert added s: positive review and removed s: needs review labels Sep 6, 2022

mkoeppe added s: needs work and removed s: positive review labels Sep 6, 2022

mkoeppe added p: critical / 2 and removed p: major / 3 labels Sep 6, 2022

mkoeppe added s: needs review and removed s: needs work labels Sep 6, 2022

mkoeppe modified the milestones: sage-9.8, sage-9.7 Sep 6, 2022

This comment has been minimized.

Sign in to view

dcoudert added s: positive review and removed s: needs review labels Sep 6, 2022

mkoeppe modified the milestones: sage-9.7, sage-9.8 Sep 19, 2022

vbraun removed the s: positive review label Sep 20, 2022

vbraun closed this as completed in a833b0e Sep 20, 2022

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

Upgrade igraph to 0.9.10 #34491

Upgrade igraph to 0.9.10 #34491

mkoeppe commented Sep 4, 2022

mkoeppe commented Sep 4, 2022

mkoeppe commented Sep 4, 2022

mkoeppe commented Sep 4, 2022

mkoeppe commented Sep 4, 2022

mkoeppe commented Sep 4, 2022

dcoudert commented Sep 4, 2022

dcoudert commented Sep 6, 2022

dimpase commented Sep 6, 2022

dcoudert commented Sep 6, 2022

dimpase commented Sep 6, 2022

dimpase commented Sep 6, 2022

dcoudert commented Sep 6, 2022

dimpase commented Sep 6, 2022

dcoudert commented Sep 6, 2022

dcoudert commented Sep 6, 2022

mkoeppe commented Sep 6, 2022

sagetrac-git mannequin commented Sep 6, 2022

sagetrac-git mannequin commented Sep 6, 2022

mkoeppe commented Sep 6, 2022

mkoeppe commented Sep 6, 2022

This comment has been minimized.

dcoudert commented Sep 6, 2022

vbraun commented Sep 20, 2022

Upgrade igraph to 0.9.10 #34491

Upgrade igraph to 0.9.10 #34491

Comments

mkoeppe commented Sep 4, 2022

mkoeppe commented Sep 4, 2022

mkoeppe commented Sep 4, 2022

mkoeppe commented Sep 4, 2022

mkoeppe commented Sep 4, 2022

mkoeppe commented Sep 4, 2022

dcoudert commented Sep 4, 2022

dcoudert commented Sep 6, 2022

dimpase commented Sep 6, 2022

dcoudert commented Sep 6, 2022

dimpase commented Sep 6, 2022

dimpase commented Sep 6, 2022

dcoudert commented Sep 6, 2022

dimpase commented Sep 6, 2022

dcoudert commented Sep 6, 2022

dcoudert commented Sep 6, 2022

mkoeppe commented Sep 6, 2022

sagetrac-git mannequin commented Sep 6, 2022

sagetrac-git mannequin commented Sep 6, 2022

mkoeppe commented Sep 6, 2022

mkoeppe commented Sep 6, 2022

This comment has been minimized.

dcoudert commented Sep 6, 2022

vbraun commented Sep 20, 2022