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What this is

This makes a lot of visualizations of the data from https://github.com/nytimes/covid-19-data including:

  • A full website with web pages showing doubling time for each and every county and state in the US
  • A map of the US showing per-state COVID-19 growth
  • CSV and ASCII tables showing growth for a given state or county

Demo

Go to https://samboy.github.io/covid-19-html/ to see what this program can do. Go to https://www.samiam.org/COVID-19/ to see doubling time graphs for each and every county and state in the United States.

Making a website of doubling time graphs

It is possible to use these scripts to make an entire website with doubling time graphs for each state and county in the US.

Needed

  • Git
  • Lua
  • Gnuplot
  • Bash (Windows users: Install Cygwin)

In this directory:

git clone https://github.com/nytimes/covid-19-data/
cp covid-19-data/us-counties.csv data.csv
lua examine-growth.lua gnuplot
cd GNUplot/
gnuplot maps.gnuplot

Once the New York Times repo is cloned:

cd covid-19-data/
git pull origin master
cd ..
cp covid-19-data/us-counties.csv data.csv
lua examine-growth.lua gnuplot
cd GNUplot/
gnuplot maps.gnuplot

It’s also possible to make the .svg top-level map a .png file (for maximum browser compatibility) if ImageMagick is installed:

convert -depth 8 GNUplot/hotSpots.svg GNUplot/hotSpots.png
cat GNUplot/index.html | sed 's/hotSpots.svg/hotSpots.png/g' > foo
mv foo GNUplot/index.html

The Lua script makes the .html files and the files needed to make the PNG graphs. Gnuplot makes the actual PNG files.

The web site

The maps.gnuplot and the .csv files are not needed on the actual web site. Only the .html, .png, and one .svg file are needed. The files make a static web site which can be hosted by almost any web server. The web site is about 170 megabytes in size (all of those .png graphs for each and every county in the United States add up).

To view the created web site, one can open up GNUplot/index.html using any modern browser from the mid-2010s or later; the website will work with Internet Explorer if the .svg file is converted in to a .png file.

Making a SVG map

To make a SVG map of the data, make sure one has Git and the programming language Lua (5.1 or higher) installed. Then, run the following commands:

git clone https://github.com/nytimes/covid-19-data/
cp covid-19-data/us-counties.csv data.csv
lua examine-growth.lua svg > map.svg

There are other options to the examine-growth.lua script, such as:

  • lua examine-growth.lua csv Texas > texas.csv
  • lua examine-growth.lua cases Florida
  • lua examine-growth.lua svg casesPer100k > map.svg

One can get full command line options with lua examine-growth.lua --help

Using the JSON file as an API

The JSON file is in the form

state → county → date → (cases, deaths)

For example, here is some data for San Diego:

{
	"California": {
		"San Diego" : {
			"2020-03-22" : {
				"cases": 205, "deaths": 0
			},
			"2020-03-23" : {
				"cases": 230, "deaths": 0
			},
			"2020-03-24" : {
				"cases": 242, "deaths": 1
			},
			"2020-03-25" : {
				"cases": 297, "deaths": 2
			}
		}
	}
}

Here is an example of using this JSON to get the current number of cases in San Diego, California:

<html><head>
<script src="libs/jquery-3.4.1.min.js"></script>
<script>
$.ajax({
        url: "https://samboy.github.io/covid-19-html/covid-19-byCounty.json",
        dataType: "json",
        success: function(result) {
                dates = result.California["San Diego"]
                cases = 0
                for(key in dates) {
                        if(dates.hasOwnProperty(key)) {
                                value = dates[key]
                                if(value.cases > cases) {
                                        cases = value.cases;
                                }
                        }
                }
                $("#dynamic").html("<i>Current information:</i> " +
                        "San Diego has " + cases +
                        " known COVID-19 cases.");
        }
});
</script>
</head>
<body>
This is a demo of using the JSON data as an API.

<div id=dynamic></div>
<noscript>Javascript will allow current San Diego figures for COVID-19 
to be loaded</noscript>
</body></html>

Attribution

The data used here is provided by The New York Times.

About

Convert and process COVID-19 data from https://github.com/nytimes/covid-19-data/ This can make an entire COVID-19 information website, SVG maps, and CSV tables

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